Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61480 1210 / 0 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT4G28650 743 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G08590 712 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 659 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 653 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 639 / 0 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT1G75820 630 / 0 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G28440 595 / 0 HSL1 HAESA-like 1 (.1) AT4G28490 569 / 0 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G48940 568 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027221 [exp] 1761 / 0 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10000814 [exp] 744 / 0 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10025943 [exp] 743 / 0 AT4G28650 1284 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10027951 [exp] 740 / 0 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10017267 [exp] 664 / 0 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10039641 [exp] 660 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10013562 [exp] 658 / 0 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10019248 [exp] 655 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10037358 [exp] 637 / 0 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G126100 [exp] 1369 / 0 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.003G107600 [exp] 1354 / 0 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.002G256500 [exp] 792 / 0 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.019G021700 [exp] 788 / 0 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G048800 [exp] 768 / 0 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G009200 [exp] 684 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.003G157300 [exp] 682 / 0 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G073600 [exp] 677 / 0 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G241500 [exp] 675 / 0 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G019900 [exp] 664 / 0 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10038930 pacid=23150465 polypeptide=Lus10038930 locus=Lus10038930.g ID=Lus10038930.BGIv1.0 annot-version=v1.0 ATGAATCTTCTCCTTCTTCTTCACCTTTTCTCTTTTCTTCTCCTTCTGCTCTTCCTCCCCGCTTCCCCTGCCTCCTCCGCCGCTGCTGCGGCAGCTCTGC CTCCTGATCTCCGAGCACTCATTTCCCTCAAATCCTCCCTTCAATTCCATGGCTGGGAAGAACCCGAATCCATCAACTCCGAACCGGGTCGACACGACCC GGTTTGGTGTTCATGGAACGGCGTTCAATGTAGAGGAGGACAAGTCACTAATCTCGATCTTTCTCGTCGGAACCTTTCCGGTTTCATCCCCACCGACATC CAACTATTGACCAGCTTGCTCCATCTCAACTTAAGTGGAAACTCCTTTGACGGCATTTTCCCATCCGCCATCTTCCAGCTTTCCAACCTCAGGACGCTTG ACATCAGCCATAACAACTTCAATTCAACTTTCCCACCCGGAATTTCGAAATTAAAATTCTTGAGAATGTTCAATGCTTATAGCAATAGCTTCACCGGTGC TCTGCCTAAAGAGTTCATGTTCCTCCGGTTCTTGGAGCAGCTCAATCTGGGAGGGAGCTATTTCGAAGGCGAGATTCCGATTGGGTACGGTAGCTTCCCA CGGCTGAAATTCCTCCACCTCGGCGGTAACGCGTTCGACGGTCCGTTGCCGCCGCAGTTGGGGTTCTTGACTCGGCTTGAACGGATGGAGATCGGGTACA ATTCATGGTCCGGTAAAGTTCCGGTGGAGTTCTCTCTGTTGAGCAATCTTAACTATCTCGATATCTCAACATGTTTCCTCTCCGGTAATCTGACTCGCGA GCTTGGGAATCTCACTCAGTTGGAATCACTGCTTCTATTCAAGAACCAGTTTACAGGGGAAATCCCTGAGAGCTTTGGGGAATTGAAGTCTCTAAAGGTG CTTGATTTGTCGGAGAATAAACTCACCGGAGTGATCCCTGAGGGAATCTCTAATTTGAAAGAGCTCACTAGGTTGAGTCTGATGAACAACGAGCTCACCG GAGACATTCCGCAAGGGATCGGAGAATTACCGAATCTCGACACGTTATCCGTCTGGAACAATTCTTTAACGGGTACTCTCCCTAGAAATCTCGGTTCCAA CGGTAAGCTAGAGTGGCTAGACGTGTCGTCGAATTTCTTGACAGGGGAAATTCCGACGAGTCTCTGTAATGGAAACAAGTTGTATAAGCTGATCCTCTTC TCCAATGGCTTCTCCGGTGAATTGCCGGATACGCTAGCGAACTGTACATCACTGTCGAGGTTCAGAATTCAAAATAACCAGCTGAACGGTTCAATTCCTG GAGGTTTCGGTTTGCTCCCGAATTTGACCTTCGTCGATCTAAGTCAGAACAATTTCAGCGGCGAGATTCCGGCGGACATCGGTGACGCTCCGGCTATGCA GTATTTCAACATATCGGAGAATAGATTCGAGTCTGGGTTGCCGAACAACATATGGAGTGCTCCGAATCTGCAGATATTCTCGGCGAGTAAGAGTGGAATA GTAGGGAAGGTTCCGGAATTCGTCGGATGCAGCAGTGTTTACAAGATCGAGCTTCAGGAGAATTCGCTCAACGGGACGATTCCTTGGGACATCGGCCACT GTGAGAAGCTGCTCTGTTTGAATCTGAGCCATAATTTGTTGATCGGAATCATTCCCTGGGAGATCTCTGCTCTCCCTTCGATAACGGATGTCGACTTATC TCGAAACTTCCTAACCGGTTCGATCCCGTCGAATTTCGGTAACTGCAGCACGATCGAGACCTTCAACGTCTCTTACAACCTCCTCACCGGTCCGATCCCG TCCTCGGGGACGATTTTCCCTAATCTGCATCCTTCGTCCTTTCTAGGAAACGACGGATTATGCGGCGGAGCCGCATCCAAGCCGTGCGAATCCCCTGCCG CCAATGCGATGGAAGTAAACGACCGGAGTAAGAGAACAACCGCAACCGCCGGAGCGATCGTGTGGGTGACGGCGGCAACGTTCGGGATCTGCCTGTTCGT GCTGGTAGCAACAACACGGTGCATGATTCAAAACCGACGGAGAAAACACGAAGATAACCGTCGCGATATAGGACCGTGGAAGCTGACGGCGTTCCAGCGG CTGAACTTCACGGCGGAGGACGTTTTGGAATGTTTGGAGACGAGCAATAACAAGGTAATCGGGATGGGATCAGCCGGGACGGTTTACAAAGCCGAAATGC CAGGTGGCGAGGTGATCGCGGTGAAGAAGCTCTGGTCTGGAAACAAAGAAACGGGCACTACTACAATGATCGGCGGTGGTTGCGGGATTGGAGGAGGACG ACGGAAGGGAGGAAGGGCGGTGGTGGCGGAGGTGGAGGTGTTGGGAAACGTGAGGCACAGGAATATCGTGAGGTTGTTAGGCTGTTGCAACAACGGAGAA TGCACGATGCTACTGTACGAGTACATGCCGAGCGGTAGCTTGGACGACCTGCTTCACGGGAAGAGGAAAGAGACCGCGGAAGGCGCAGACTGGGTAGAAC GGCACCGGATAGCTATTGGTGTCGCTGAGGGGATATGCTATCTCCACCACGACTGTGACCCGGTCATCGTGCATCGAGATCTTAAACCGAGCAACATACT CTTGGACGGTGAGATGGAGGCTAGGGTGGCAGACTTCGGCGTCGCCAAGTTGATCCAGAGCGACTCCGAGTCCATGTCCGTCATCGCCGGCTCCTACGGC TACATTGCTCCAGAATACGCCTACACGCTCCAAGTCGACGAGAAATCCGACATATACAGCTACGGGGTGGTACTAATGGAGATCCTTTCGGGGAAAAGAT CGGTGGGGTCTGAATTCGGAGAAGGGAACAGCATAGTCGACTGGGTCAGGTCCAAAATCAAGACCAAAGACGGGTTCAACGACGTCCTCGACAAGAACGC CGGCGCCGGAATACCTTCGGTGAGGGAGGAGATGATGCAGATGCTGAAGATAGCTCTGCTGTGCACCAGCCGCAACCCGTCTGACCGACCATCGATGAGG GACGTAGTGATCATGCTGCAGGCGGCGGCGCCAAAACGGAAACTGGTGGTGGTTAGTGACGGCGGCGGCGAGAGTAGGGTGGAGGGTGAGAGTGGGGTTA TAGTACAGAAGTGA
AA sequence Show only first row Show all	>Lus10038930 pacid=23150465 polypeptide=Lus10038930 locus=Lus10038930.g ID=Lus10038930.BGIv1.0 annot-version=v1.0 MNLLLLLHLFSFLLLLLFLPASPASSAAAAAALPPDLRALISLKSSLQFHGWEEPESINSEPGRHDPVWCSWNGVQCRGGQVTNLDLSRRNLSGFIPTDI QLLTSLLHLNLSGNSFDGIFPSAIFQLSNLRTLDISHNNFNSTFPPGISKLKFLRMFNAYSNSFTGALPKEFMFLRFLEQLNLGGSYFEGEIPIGYGSFP RLKFLHLGGNAFDGPLPPQLGFLTRLERMEIGYNSWSGKVPVEFSLLSNLNYLDISTCFLSGNLTRELGNLTQLESLLLFKNQFTGEIPESFGELKSLKV LDLSENKLTGVIPEGISNLKELTRLSLMNNELTGDIPQGIGELPNLDTLSVWNNSLTGTLPRNLGSNGKLEWLDVSSNFLTGEIPTSLCNGNKLYKLILF SNGFSGELPDTLANCTSLSRFRIQNNQLNGSIPGGFGLLPNLTFVDLSQNNFSGEIPADIGDAPAMQYFNISENRFESGLPNNIWSAPNLQIFSASKSGI VGKVPEFVGCSSVYKIELQENSLNGTIPWDIGHCEKLLCLNLSHNLLIGIIPWEISALPSITDVDLSRNFLTGSIPSNFGNCSTIETFNVSYNLLTGPIP SSGTIFPNLHPSSFLGNDGLCGGAASKPCESPAANAMEVNDRSKRTTATAGAIVWVTAATFGICLFVLVATTRCMIQNRRRKHEDNRRDIGPWKLTAFQR LNFTAEDVLECLETSNNKVIGMGSAGTVYKAEMPGGEVIAVKKLWSGNKETGTTTMIGGGCGIGGGRRKGGRAVVAEVEVLGNVRHRNIVRLLGCCNNGE CTMLLYEYMPSGSLDDLLHGKRKETAEGADWVERHRIAIGVAEGICYLHHDCDPVIVHRDLKPSNILLDGEMEARVADFGVAKLIQSDSESMSVIAGSYG YIAPEYAYTLQVDEKSDIYSYGVVLMEILSGKRSVGSEFGEGNSIVDWVRSKIKTKDGFNDVLDKNAGAGIPSVREEMMQMLKIALLCTSRNPSDRPSMR DVVIMLQAAAPKRKLVVVSDGGGESRVEGESGVIVQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10038930 [exp]	0	1
AT5G22400			Rho GTPase activating protein ...		Lus10014213 [exp]	1.4	0.9793
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10027221 [exp]	1.4	0.9786
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Lus10011616 [exp]	4.5	0.9673
AT3G59690		IQD13	IQ-domain 13 (.1)		Lus10027059 [exp]	5.5	0.9668
AT4G39410	WRKY	ATWRKY13, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020832 [exp]	5.7	0.9645
AT5G22400			Rho GTPase activating protein ...		Lus10022700 [exp]	6.6	0.9643
AT1G11410			S-locus lectin protein kinase ...		Lus10042939 [exp]	8.2	0.9485
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10017863 [exp]	9.2	0.9679
AT3G59690		IQD13	IQ-domain 13 (.1)		Lus10025593 [exp]	11.5	0.9648
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Lus10014238 [exp]	12.0	0.9639

Compare expression of checked genes

Lus10038930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.