Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07630 302 / 5e-99 lipid transporters (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027222 [exp] 296 / 1e-98 AT5G07630 557 / 0.0 lipid transporters (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G126200 [exp] 321 / 2e-107 AT5G07630 757 / 0.0 lipid transporters (.1) Potri.003G107501 [exp] 105 / 9e-29 AT5G07630 91 / 3e-23 lipid transporters (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF04506 [flax] [poplar] Rft-1 Rft protein
Representative CDS sequence Show only first row Show all	>Lus10038931 pacid=23150586 polypeptide=Lus10038931 locus=Lus10038931.g ID=Lus10038931.BGIv1.0 annot-version=v1.0 ATGAAAGCCACGTTGCCGGATGTTCGGCCCAAGGCTTATCCGGATCCATTTGGCCATTTTTCTAGACGTCTTTTCTGGTGGGCTACACAGTTGTTGTCCA GAGGAATCCCGTTCATCTTCAATTCATGGCTCGTCAGCCCCCCCCCCGCCGAAGACTATGCAGAGAAAATGATTGTCTTTGCACTGTCTCAGACTGCATA TGGAGCTTGCTTGTTTGTAGGATACTGGGGATATTTTCTCCTTTGCCCTGCATTTAGGAACTTCAAATTGTTTCCTTTCAGGCTTGGAGCAGTGAGGGAT TATGATAAGCAGCTCTCAAATATGTGCATGCTGTTTACTTTCCAATCCTTTCGGAAGCTAATACTTCAAGAAGGCGAAAAGCTTGTCCTTGTGTGGCTCG ATACCCCGTATAATCAAGCTGTTTATGGACTTGTTGACAAATTAGGGAGCTTGGTCGTGAGAATGGTGTTTCTTCCTTTTGAAGAAAGCTCATATGCTAC ATTTGCCAGGTCTGCATCAGGACAGTATCCAAACAAAGCAGCAAGGTTGGGGGCATCACTAACTGAGGGACTGAAGCTTGTTCTGTTAATCGGTCTTGTG TTTATGGCATTCGGTCCTAGTTACTCGTACTCTCTCATTCGGTTGCTGTACGGCCAGAAATGGAGCGATGGAGAAGCATCAGTGGCCCTCCAATACTATT GCCTCTACGTGATAGTTTTGGCAATGAATGATATCGACGCGAGAGGTCCTTCATCAACAAGATCATACGCTTCCGAGATCATGAAGACTGAAAGACATCA TTTCCGAAATGCAAGAGTCAAAGATATCGATTTTGGAGGAGAAGAGAGTCCAGAGTGA
AA sequence Show only first row Show all	>Lus10038931 pacid=23150586 polypeptide=Lus10038931 locus=Lus10038931.g ID=Lus10038931.BGIv1.0 annot-version=v1.0 MKATLPDVRPKAYPDPFGHFSRRLFWWATQLLSRGIPFIFNSWLVSPPPAEDYAEKMIVFALSQTAYGACLFVGYWGYFLLCPAFRNFKLFPFRLGAVRD YDKQLSNMCMLFTFQSFRKLILQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPNKAARLGASLTEGLKLVLLIGLV FMAFGPSYSYSLIRLLYGQKWSDGEASVALQYYCLYVIVLAMNDIDARGPSSTRSYASEIMKTERHHFRNARVKDIDFGGEESPE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07630			lipid transporters (.1)		Lus10038931 [exp]	0	1
AT5G55060			unknown protein		Lus10040061 [exp]	12.6	0.9087
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10006230 [exp]	16.2	0.8950
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Lus10026790 [exp]	19.9	0.8837
AT4G19110			Protein kinase superfamily pro...		Lus10008303 [exp]	20.0	0.8890
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10033396 [exp]	21.2	0.8746
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10038219 [exp]	21.7	0.8998
AT5G41800			Transmembrane amino acid trans...		Lus10003903 [exp]	22.5	0.8907
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10039131 [exp]	24.2	0.8886
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10041121 [exp]	33.9	0.8640
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10014363 [exp]	40.4	0.8770

Compare expression of checked genes

Lus10038931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.