Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51300 804 / 0 splicing factor-related (.1.2.3) AT1G09660 112 / 5e-27 RNA-binding KH domain-containing protein (.1.2) AT3G08620 106 / 3e-25 RNA-binding KH domain-containing protein (.1) AT2G38610 104 / 1e-24 RNA-binding KH domain-containing protein (.1.2) AT4G26480 101 / 3e-23 RNA-binding KH domain-containing protein (.1) AT5G56140 100 / 6e-23 RNA-binding KH domain-containing protein (.1) AT3G32940 86 / 3e-17 RNA-binding KH domain-containing protein (.1) AT4G13860 73 / 1e-15 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 76 / 1e-14 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT5G50250 74 / 3e-14 CP31B chloroplast RNA-binding protein 31B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037344 [exp] 118 / 5e-29 AT1G09660 400 / 1e-141 RNA-binding KH domain-containing protein (.1.2) Lus10035768 [exp] 117 / 8e-29 AT1G09660 399 / 7e-141 RNA-binding KH domain-containing protein (.1.2) Lus10035608 [exp] 104 / 1e-24 AT2G38610 494 / 6e-179 RNA-binding KH domain-containing protein (.1.2) Lus10003241 [exp] 104 / 2e-24 AT2G38610 488 / 1e-176 RNA-binding KH domain-containing protein (.1.2) Lus10019116 [exp] 102 / 7e-24 AT2G38610 275 / 7e-93 RNA-binding KH domain-containing protein (.1.2) Lus10034443 [exp] 102 / 3e-23 AT2G38610 327 / 3e-112 RNA-binding KH domain-containing protein (.1.2) Lus10035015 [exp] 96 / 1e-21 AT2G38610 315 / 5e-108 RNA-binding KH domain-containing protein (.1.2) Lus10039188 [exp] 100 / 2e-21 AT3G32940 255 / 2e-75 RNA-binding KH domain-containing protein (.1) Lus10021676 [exp] 96 / 2e-21 AT2G38610 314 / 1e-107 RNA-binding KH domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G126400 [exp] 854 / 0 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3) Potri.003G107200 [exp] 841 / 0 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3) Potri.004G225900 [exp] 117 / 9e-29 AT1G09660 334 / 2e-115 RNA-binding KH domain-containing protein (.1.2) Potri.003G005500 [exp] 116 / 1e-28 AT1G09660 335 / 8e-116 RNA-binding KH domain-containing protein (.1.2) Potri.016G140800 [exp] 105 / 6e-25 AT2G38610 456 / 7e-164 RNA-binding KH domain-containing protein (.1.2) Potri.011G168000 [exp] 105 / 1e-24 AT5G56140 427 / 8e-152 RNA-binding KH domain-containing protein (.1) Potri.013G159800 [exp] 104 / 1e-24 AT2G38610 408 / 7e-145 RNA-binding KH domain-containing protein (.1.2) Potri.001G471000 [exp] 102 / 1e-23 AT5G56140 425 / 9e-151 RNA-binding KH domain-containing protein (.1) Potri.003G216800 [exp] 104 / 6e-23 AT3G32940 249 / 5e-73 RNA-binding KH domain-containing protein (.1) Potri.006G111400 [exp] 100 / 6e-23 AT2G38610 467 / 4e-168 RNA-binding KH domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10038932 pacid=23150266 polypeptide=Lus10038932 locus=Lus10038932.g ID=Lus10038932.BGIv1.0 annot-version=v1.0 ATGGATTCCGTCGACGCAGCTCCGATCCCTCCCCCGCCTGAAAATCCAGCTCCCGACGGCATCCAGTCTAATCCGCAGCCCGAGTCTCACGCCGCTGGTC ATCCCACTGCATCCGCCGGCAACGGTCAGATCGCTGCTCCCAAGTTCGACCTCGCCATCGCCAAGCCGCTGCTGTCCGAGAATGGCCTGACAAACACCAA CACCAATAGCGGCGAGAGAGACTTCTCAGGCGGAGAAGAAGAGACTTCTAGCCGCCGCAAGCGGAGGAGCCGATGGGATCCGCAGCCTGAATTGGGAGAC GGTGGGAACAATAACGAATCCGGGAATGGGGCGAGGAAGAGGAAGTCTAGATGGGCGAATGACGAGCCGAAGCCGGTGATTCAGCTCCCGGACTTCATGA AGGATTTCACCGGAGGTATTGAATTCGATCCGGAAGTTCAAGCGTTGAACGCTAGGCTTCTGGAGATTAGTAGGATGTTACAGAATAATATGCCGCTTGA TGATCGGCCTGAAGGGGCTAGGTCTCCTTCTCCTGAACCGATATATGATAATATGGGGATTAGGATCAATACTAGGGAGTTTAGGGCTAGGGAGAGGTTG AACAAAGAGAGGCAGGAGATTATCTCGCAGATTATTAAGAAGAATCCCGCGTTTAAGCCTCCTGCTGATTATAGGCCTCCTAAGCTTTACAAGAAGCTTT ACATACCGATGAAAGAGTATCCAGGGTATAACTTTATTGGTTTGATTATTGGGCCGAGGGGGAACACACAGAAAAGGATGGAGAGGGAAACGGGTGCTAA GATTGTGATTCGGGGTAAAGGGTCGGTGAAGGAAGGTAGGCTGCAGCAGAAGAGGGATTTGAAGCCTGATCCGTCTGAGAATGAAGATTTGCATGTTTTG GTTGAGGCAGATACTCAGGAGGCACTGGATGCTGCTGCTGGCATGGTTGAGAAGTTGTTGCAACCTGTTGATGAGGTTCTGAATGAGCATAAGAGACAGC AGCTTAGGGAACTGGCTGCTTTGAATGGGACAATTAGGGATGAAGAGTATTGTAGGTTGTGTGGTGAGCCTGGACATAGGCAGTACGCTTGTCCCTCACG GACTACAACCTTCAAGAGTGATGTGCTGTGTAAGATTTGCGGTGATGGTGGGCATCCTACTATTGATTGTCCTGTTAAGGGGACAACTGGGAAGAAAATG GATGATGAGTACCAGAACTTCCTGGCTGAGCTGGGAGGGACTATGCCTGAATCTTCCATTAAGCAAACTTCCACCTTAGCTTTGGGATCAGGTGGATCTG GAGGCAATCATCCATGGTCCAGAAACACTGGAGGTTTAGGTAGTGAGAACCAAGCTGGACTAGGAGCCGGTGATGCTAGACAGCCCAAGGAATATGATGA TTGCAATTTGTACATTGGCTACTTGCCTCCTACTTTCGACGATGATCTTCTGATCCAGTTGTTCTCTTCCTTTGGTGAGATTGTGATGGCTAAGGTAATT AAGGATCGAATTACTGGACTGAGCAAAGGGTATGGCTTTGTCAAGTATCGTGATGTTCAAATGGCTAATTCAGCAATTACTGGCATGAATGGAGCTCGGG TTGAAGGTCGTTCGATTGCTGTGAGGGTTGCTGGTAAGCCTCCTCAACCTCCTGTTCCTCCTGGCCCGCCTGCATCAAACATGCCCACATACCCTGTATC AAGTCAACCTCCTGGTGCCTATCCATGTCAGCAATTCATCCCGGGTGGTCCTCTTCCAAGTGGCCCTCCTGGAAACTATGCTCCACCTCCTCCAAACTAT GGGGCTCCTGTTCCGTGGGGACCTCCTGTTCCCCCTTCATATGCTACTTATCCGCCGCCTCCTCCTGGATCAACCATGTACCCTCCTCCTCCTCCTCCAG GACATCCTATGCCACCTTATGGTGGACAGTATCCTCCACCTCCTGGTGCACCTAATCCTACTGTAGCCTCTAGTGAAGCTCAGCAAAGTTACCCACCTGG CGTTCCTCCTGATAACAGCACATCTGCACCTCAACCTGCATCATCAAACATCTATGGCAATTTTGTTCCGCCAATGCCATCTGGTGTCCAACCCGCTTAT GCAACATCTTCTTTAAGTTACACATCTTACTACAGTGCAGTTCCTCCTCCTGTGCCTATGCCGTCAAATGATCATTCCCACGGGATGAGCAATGTGCCAT GGGCACAAAATCCCCAAGCACCACCACCTCCGGCAGCTTCTTCTGCAGAGAAGGGAAACTATGGAGCTGATGCTGAGTATGAAAAATTCATGGCAGAAAT GAAGTGA
AA sequence Show only first row Show all	>Lus10038932 pacid=23150266 polypeptide=Lus10038932 locus=Lus10038932.g ID=Lus10038932.BGIv1.0 annot-version=v1.0 MDSVDAAPIPPPPENPAPDGIQSNPQPESHAAGHPTASAGNGQIAAPKFDLAIAKPLLSENGLTNTNTNSGERDFSGGEEETSSRRKRRSRWDPQPELGD GGNNNESGNGARKRKSRWANDEPKPVIQLPDFMKDFTGGIEFDPEVQALNARLLEISRMLQNNMPLDDRPEGARSPSPEPIYDNMGIRINTREFRARERL NKERQEIISQIIKKNPAFKPPADYRPPKLYKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVL VEADTQEALDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPSRTTTFKSDVLCKICGDGGHPTIDCPVKGTTGKKM DDEYQNFLAELGGTMPESSIKQTSTLALGSGGSGGNHPWSRNTGGLGSENQAGLGAGDARQPKEYDDCNLYIGYLPPTFDDDLLIQLFSSFGEIVMAKVI KDRITGLSKGYGFVKYRDVQMANSAITGMNGARVEGRSIAVRVAGKPPQPPVPPGPPASNMPTYPVSSQPPGAYPCQQFIPGGPLPSGPPGNYAPPPPNY GAPVPWGPPVPPSYATYPPPPPGSTMYPPPPPPGHPMPPYGGQYPPPPGAPNPTVASSEAQQSYPPGVPPDNSTSAPQPASSNIYGNFVPPMPSGVQPAY ATSSLSYTSYYSAVPPPVPMPSNDHSHGMSNVPWAQNPQAPPPPAASSAEKGNYGADAEYEKFMAEMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51300			splicing factor-related (.1.2....		Lus10038932 [exp]	0	1
AT4G02010			Protein kinase superfamily pro...		Lus10037526 [exp]	1.4	0.9028
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10011188 [exp]	2.8	0.8951
AT4G23460			Adaptin family protein (.1)		Lus10024654 [exp]	7.3	0.8942
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10019481 [exp]	7.5	0.8742
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10007932 [exp]	9.2	0.8851
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10015696 [exp]	10.6	0.8729
AT1G24265			Protein of unknown function (D...		Lus10003127 [exp]	11.7	0.8585
AT1G10700		PRS3	phosphoribosyl pyrophosphate (...		Lus10036849 [exp]	13.3	0.8123
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10000183 [exp]	13.4	0.8776
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031201 [exp]	13.9	0.8689

Compare expression of checked genes

Lus10038932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.