Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65680 274 / 6e-92 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1) AT2G45110 232 / 6e-76 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT1G65681 222 / 3e-72 EXPB6 beta expansin 6 (.1) AT4G28250 206 / 2e-65 ATHEXPBETA1.6, ATEXPB3 expansin B3 (.1.2) AT2G20750 198 / 2e-62 ATHEXPBETA1.5, ATEXPB1 expansin B1 (.1) AT3G60570 192 / 2e-60 ATHEXPBETA1.3, ATEXPB5 expansin B5 (.1) AT4G17030 114 / 6e-30 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1) AT4G38400 109 / 4e-28 ATEXPL2, ATHEXPBETA2.2, EXPL2, ATEXLA2 EXPANSIN L2, expansin-like A2 (.1) AT3G45970 108 / 5e-28 ATHEXPBETA2.1, ATEXPL1, ATEXLA1 EXPANSIN L1, expansin-like A1 (.1) AT3G45960 105 / 3e-27 ATHEXPBETA2.3, ATEXPL3, ATEXLA3 expansin-like A3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036066 [exp] 272 / 9e-92 AT1G65680 286 / 1e-97 expansin B2 (.1) Lus10039816 [exp] 217 / 9e-70 AT4G28250 402 / 3e-143 expansin B3 (.1.2) Lus10018583 [exp] 217 / 1e-69 AT4G28250 398 / 1e-141 expansin B3 (.1.2) Lus10027223 [exp] 213 / 2e-69 AT1G65680 129 / 2e-37 expansin B2 (.1) Lus10031638 [exp] 204 / 7e-63 AT2G20770 238 / 3e-76 GCR2-like 2 (.1) Lus10033700 [exp] 201 / 1e-62 AT1G65680 233 / 2e-75 expansin B2 (.1) Lus10040149 [exp] 120 / 2e-32 AT4G17030 221 / 2e-72 expansin-like B1 (.1) Lus10000957 [exp] 119 / 4e-32 AT4G17030 226 / 2e-74 expansin-like B1 (.1) Lus10011013 [exp] 117 / 2e-31 AT4G17030 302 / 2e-104 expansin-like B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G066300 [exp] 303 / 3e-103 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.013G134300 [exp] 214 / 1e-68 AT4G28250 402 / 2e-143 expansin B3 (.1.2) Potri.019G101900 [exp] 206 / 1e-65 AT4G28250 367 / 1e-129 expansin B3 (.1.2) Potri.004G181700 [exp] 115 / 1e-30 AT4G38400 348 / 3e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.001G112900 [exp] 115 / 1e-30 AT1G12560 364 / 5e-128 expansin A7 (.1) Potri.003G083200 [exp] 111 / 5e-29 AT4G17030 311 / 1e-107 expansin-like B1 (.1) Potri.001G151500 [exp] 110 / 1e-28 AT4G17030 297 / 6e-102 expansin-like B1 (.1) Potri.009G141400 [exp] 110 / 2e-28 AT4G38400 349 / 5e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.003G087000 [exp] 97 / 1e-23 AT4G17030 183 / 3e-57 expansin-like B1 (.1) Potri.008G088300 [exp] 96 / 4e-23 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10038933 pacid=23150401 polypeptide=Lus10038933 locus=Lus10038933.g ID=Lus10038933.BGIv1.0 annot-version=v1.0 ATGGCGCCCATGAACACTCTTTCTTCATCAACGACATTTCCCCTTGTGTCTGCTTACGCCACTATCGTCATATACTTGTCCATGTTTCATCTCTCTTCTT CCTCCCGGCCCATGAACGACGTCGGGTTTGGCCATTTCAACCGATCGAACGCCGCCACCGAGCTAGCTCAGAGCCAGTGGTCACCCGCCGGTGCAACTTG GTACGGCGGCCCTGACGGCGACGGGAGCGACGGTGGAGCTTGTGGATATAGTACGGCGGTATCACAACCTCCATTCTCCTCCATGGTCACGGCGGTCGGC CCATCTCTTTACAACTCCGGCAAAGAATGTGGAGCTTGTTACCAAGTCAAATGCACAAATAATCCATCTTGTTCGGGCAAACCTGTTCGAGTGGTCATAA CCGACTCTTGTCCCGGTGGTTCTTGTGCATCGGACTCCGCACATTTCGATCTTAGTGGTACCGCATTTGGTGCCATGGCGCTCCCTGGCCAGGAAAGTAA GCTTCGTGACGCTGGGGTGCTCCAAGTCTCGTACTCAAGGGTTCCATGCGAGTACCCAGGCAAAACGGTGGCGTTCCACGTGGACTCCGGCTCGAACGCG GACTACTTCGCGGTGGTCGTGGAGTTCGAAGCAGGCGACGGCGATCTAGCCACCGTGGGCCTGCAGCAATCGGCGGCAACTCCACACCAATCCGACGTGG ATCAATGGGAGCCGATGCAGCAGTCGTGGGGGGCAGTCTGGAAGCTCGACGCAGGGAACAAATTGAACCCTCCGTTTTCCATCAAACTAACTTCGCAATT CTCCGGCAAGACCCTCGTGGCGAAAAATGTGATCCCCGTCGGATGGCAGCCCGGCGCTACTTATAGATCGCTCGTGAATTTTAATTAA
AA sequence Show only first row Show all	>Lus10038933 pacid=23150401 polypeptide=Lus10038933 locus=Lus10038933.g ID=Lus10038933.BGIv1.0 annot-version=v1.0 MAPMNTLSSSTTFPLVSAYATIVIYLSMFHLSSSSRPMNDVGFGHFNRSNAATELAQSQWSPAGATWYGGPDGDGSDGGACGYSTAVSQPPFSSMVTAVG PSLYNSGKECGACYQVKCTNNPSCSGKPVRVVITDSCPGGSCASDSAHFDLSGTAFGAMALPGQESKLRDAGVLQVSYSRVPCEYPGKTVAFHVDSGSNA DYFAVVVEFEAGDGDLATVGLQQSAATPHQSDVDQWEPMQQSWGAVWKLDAGNKLNPPFSIKLTSQFSGKTLVAKNVIPVGWQPGATYRSLVNFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Lus10038933 [exp]	0	1
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10012478 [exp]	2.8	0.8451
AT2G43870			Pectin lyase-like superfamily ...		Lus10011419 [exp]	4.2	0.8072
AT1G48580			unknown protein		Lus10009051 [exp]	6.0	0.7453
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10016708 [exp]	7.2	0.8063
AT2G43870			Pectin lyase-like superfamily ...		Lus10002123 [exp]	7.7	0.7971
AT1G09380			nodulin MtN21 /EamA-like trans...		Lus10001523 [exp]	8.9	0.7637
AT1G80100		AHP6	histidine phosphotransfer prot...		Lus10023127 [exp]	11.6	0.8119
AT4G33495		RPD1	ROOT PRIMORDIUM DEFECTIVE 1, U...		Lus10027440 [exp]	19.9	0.7032
AT1G56230			Protein of unknown function (D...		Lus10020675 [exp]	24.7	0.6455
AT5G05340			Peroxidase superfamily protein...		Lus10000346 [exp]	29.6	0.7805

Compare expression of checked genes

Lus10038933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.