Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68490 49 / 5e-08 unknown protein AT5G16110 49 / 1e-07 unknown protein AT1G13390 47 / 4e-07 unknown protein AT3G02555 37 / 0.0007 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027224 [exp] 177 / 2e-58 AT3G02555 84 / 2e-20 unknown protein Lus10009170 [exp] 50 / 2e-08 AT5G16110 160 / 7e-50 unknown protein Lus10028474 [exp] 49 / 6e-08 AT5G16110 160 / 8e-50 unknown protein Lus10041444 [exp] 47 / 5e-07 AT1G68490 180 / 5e-58 unknown protein Lus10017599 [exp] 43 / 6e-06 AT5G16110 137 / 8e-41 unknown protein Lus10033560 [exp] 37 / 0.001 AT5G16110 136 / 3e-40 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G047100 [exp] 63 / 2e-13 AT1G68490 116 / 4e-33 unknown protein Potri.010G124400 [exp] 55 / 3e-10 AT1G68490 151 / 7e-47 unknown protein Potri.017G114700 [exp] 55 / 3e-10 AT5G16110 139 / 4e-41 unknown protein Potri.004G099800 [exp] 52 / 4e-09 AT5G16110 135 / 7e-40 unknown protein Potri.012G056500 [exp] 51 / 5e-09 AT1G68490 119 / 2e-34 unknown protein Potri.008G121000 [exp] 50 / 3e-08 AT1G68490 150 / 3e-46 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038934 pacid=23150682 polypeptide=Lus10038934 locus=Lus10038934.g ID=Lus10038934.BGIv1.0 annot-version=v1.0 ATGGGAGCTGCAGCGTCCTCTTATGAAGAGATGAAGATGGAGACTGTAGTTTGTCCCAAGCCTCGTAGATTGGGTGCTCTCAATCCTTCCCTCCATGGCT TCCGATTCCATCCTCCTTCACCGCCTTTAAGTCGGTACCAATTGGAGCTCGACGATTCCCGAGCTGGAGCGGAGCTCGTCGATTTAATCCTCGCCAAGAG AGGGTGTAATTTACCACCGTCGCCGCCGTTCTATTGTGGGTCGCCGCCGAGCAGGGCGACGAATCCGGTGATTGAGGATGCGGAGTTCGGGACTCAAAAC AGAACTGCCGCATCTCCGCCGTGGCTTGAGGGGAAAAGGGTGATAAAGTTAAAATAA
AA sequence Show only first row Show all	>Lus10038934 pacid=23150682 polypeptide=Lus10038934 locus=Lus10038934.g ID=Lus10038934.BGIv1.0 annot-version=v1.0 MGAAASSYEEMKMETVVCPKPRRLGALNPSLHGFRFHPPSPPLSRYQLELDDSRAGAELVDLILAKRGCNLPPSPPFYCGSPPSRATNPVIEDAEFGTQN RTAASPPWLEGKRVIKLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68490			unknown protein		Lus10038934 [exp]	0	1
AT3G02555			unknown protein		Lus10027224 [exp]	1.0	0.9683
AT4G13020		MHK	Protein kinase superfamily pro...		Lus10003155 [exp]	2.2	0.9114
AT1G28260			Telomerase activating protein ...		Lus10014007 [exp]	4.0	0.9218
AT3G49940	AS2	LBD38	LOB domain-containing protein ...		Lus10019292 [exp]	4.1	0.8715
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10020086 [exp]	4.7	0.8634
AT4G10730			Protein kinase superfamily pro...		Lus10017326 [exp]	7.7	0.8644
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10040134 [exp]	7.9	0.8244
AT2G39950			unknown protein		Lus10028266 [exp]	8.7	0.9153
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10028303 [exp]	9.2	0.9161
AT1G15670			Galactose oxidase/kelch repeat...		Lus10017300 [exp]	9.5	0.8819

Compare expression of checked genes

Lus10038934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.