Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02930 64 / 3e-11 F-box/RNI-like superfamily protein (.1) AT1G60400 62 / 2e-10 F-box/RNI-like superfamily protein (.1) AT1G80470 62 / 2e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G16930 61 / 4e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G38396 60 / 8e-10 F-box/RNI-like superfamily protein (.1) AT1G78760 59 / 1e-09 F-box/RNI-like superfamily protein (.1) AT1G78750 58 / 4e-09 F-box/RNI-like superfamily protein (.1) AT1G16940 57 / 7e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G69630 57 / 1e-08 F-box/RNI-like superfamily protein (.1) AT5G02910 56 / 1e-08 F-box/RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006513 [exp] 290 / 3e-96 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10027225 [exp] 272 / 6e-91 ND / Lus10038967 [exp] 262 / 5e-83 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10029433 [exp] 211 / 1e-65 AT3G18150 79 / 8e-16 RNI-like superfamily protein (.1) Lus10027244 [exp] 212 / 2e-65 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10032255 [exp] 211 / 2e-65 AT5G02930 85 / 6e-18 F-box/RNI-like superfamily protein (.1) Lus10027258 [exp] 208 / 3e-65 AT4G03220 74 / 9e-15 Protein with RNI-like/FBD-like domains (.1) Lus10035564 [exp] 195 / 6e-60 AT3G58900 79 / 1e-16 F-box/RNI-like superfamily protein (.1.2.3.4) Lus10020292 [exp] 197 / 8e-60 AT1G60410 76 / 9e-15 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 115 / 3e-29 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 91 / 1e-20 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 72 / 4e-14 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G002001 [exp] 63 / 6e-11 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G024200 [exp] 59 / 2e-09 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G098700 [exp] 57 / 7e-09 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.011G024300 [exp] 56 / 2e-08 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G121400 [exp] 55 / 3e-08 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.001G322900 [exp] 51 / 7e-07 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G104200 [exp] 50 / 9e-07 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10038935 pacid=23150564 polypeptide=Lus10038935 locus=Lus10038935.g ID=Lus10038935.BGIv1.0 annot-version=v1.0 ATGGTGGGAATTGACAGGCTGAGTGATCTCCATGACAATATTTTGCATCAAATTCTTTTTTTTGTCGACACTCAATCTTCAGTTCGAACTAGTATTTTGT CTAGGAGGTGGAGATCGGTATGGAAACATGTTACCGTTCTCAATTTCGATCGGAGTTCGTTCAAGTCTCGTCGTGTTTTTAACCGGCTCGTGGAGCGAGT TCTATCCCTCCATTATGACCGTGTTAGCATCACAAGGGTTACAATGGACAACTGGGGGGTAGAAAAAAAGAAGAATCTTTTTGATAGGTTAATGAAATAC CCCTCATGTTATCAATCTCTGAAAGCTCTTGAATTGCAGCGAACACTTATAGAACAGCCCGACGTTAAATTATTGTCTCGTTTCCAACTGCTTGAATCTC TTACTCTGATAAGCTGCTGCATCACTGCAGATGATGATCCTTTTGCTAACTTTCCCAGATTGGAAACCTTGAAGCTGGTCGATCCGGGTAGAATGTCATG TTCTCAGACCGGTTTTCTGAAAGTAACTGGCCCCAAACTGCTTAACTTGGAGATCGTTTCACCAATATTCGAAGGTCTTCAAATCAATGCTCCCAAGCTC CAATCTTTCAGTCTTAAGATTTTCCTTTCACATTGTGCACAAGTGTCCAAGGACTCGGATGTTCCTTCCCTCAATCGTGCAAACATCACGCTGTTTGGTT ACACGCATTCCACGTTGTTTGGTGGCATCGATGCCAAGAGGCAGCTCGACAACTTGTTCGACATTTTGCAGAATGTACAGGCTCTCAATCTGGAGGTTCG ACCCTTTGAGCTGCTGATCGAGACTTGCAACTCGGTGAAATGCAAACCTCCCCGTTTTAAAAGAATGAAGGCATTGAATTTGAGGTGTTTAAAAGGAGCA TCCTCCGATGTACCTGATGAAGTGATTCGTTACTTTCTTGGAGCCGGCTATCGCAATGAAGAAGAGAAGCGTTTTACAGTTGAGAAGCTACAGTGA
AA sequence Show only first row Show all	>Lus10038935 pacid=23150564 polypeptide=Lus10038935 locus=Lus10038935.g ID=Lus10038935.BGIv1.0 annot-version=v1.0 MVGIDRLSDLHDNILHQILFFVDTQSSVRTSILSRRWRSVWKHVTVLNFDRSSFKSRRVFNRLVERVLSLHYDRVSITRVTMDNWGVEKKKNLFDRLMKY PSCYQSLKALELQRTLIEQPDVKLLSRFQLLESLTLISCCITADDDPFANFPRLETLKLVDPGRMSCSQTGFLKVTGPKLLNLEIVSPIFEGLQINAPKL QSFSLKIFLSHCAQVSKDSDVPSLNRANITLFGYTHSTLFGGIDAKRQLDNLFDILQNVQALNLEVRPFELLIETCNSVKCKPPRFKRMKALNLRCLKGA SSDVPDEVIRYFLGAGYRNEEEKRFTVEKLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60400			F-box/RNI-like superfamily pro...		Lus10038935 [exp]	0	1
AT5G53840			F-box/RNI-like/FBD-like domain...		Lus10025675 [exp]	1.0	1.0000
AT4G34880			Amidase family protein (.1)		Lus10002805 [exp]	1.4	0.9701
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10022204 [exp]	8.0	0.7185
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10027216 [exp]	8.5	0.7132
					Lus10028048 [exp]	8.8	0.7218
					Lus10026785 [exp]	10.2	0.7218
					Lus10042413 [exp]	11.0	0.6949
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10011252 [exp]	11.4	0.7218
					Lus10023352 [exp]	12.5	0.7218
AT5G67440		MEL2, NPY3	NAKED PINS IN YUC MUTANTS 3, M...		Lus10025193 [exp]	13.5	0.7218

Compare expression of checked genes

Lus10038935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.