Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73850 372 / 4e-122 Protein of unknown function (DUF1666) (.1) AT3G20260 153 / 5e-41 Protein of unknown function (DUF1666) (.1) AT1G69610 82 / 4e-16 Protein of unknown function (DUF1666) (.1) AT5G39785 76 / 2e-14 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027226 [exp] 736 / 0 AT1G73850 455 / 5e-153 Protein of unknown function (DUF1666) (.1) Lus10034809 [exp] 138 / 2e-35 AT3G20260 487 / 3e-171 Protein of unknown function (DUF1666) (.1) Lus10033354 [exp] 128 / 4e-32 AT3G20260 462 / 5e-162 Protein of unknown function (DUF1666) (.1) Lus10036751 [exp] 90 / 1e-18 AT5G39785 328 / 7e-104 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10037176 [exp] 84 / 7e-17 AT5G39785 334 / 4e-106 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10015368 [exp] 75 / 5e-14 AT5G39785 445 / 3e-148 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10007264 [exp] 59 / 8e-09 AT5G39785 411 / 2e-135 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G056400 [exp] 480 / 1e-164 AT1G73850 397 / 5e-131 Protein of unknown function (DUF1666) (.1) Potri.015G046900 [exp] 458 / 5e-156 AT1G73850 416 / 2e-138 Protein of unknown function (DUF1666) (.1) Potri.008G004400 [exp] 155 / 6e-42 AT3G20260 426 / 3e-147 Protein of unknown function (DUF1666) (.1) Potri.017G082300 [exp] 91 / 6e-19 AT5G39785 462 / 1e-153 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Potri.004G126800 [exp] 89 / 3e-18 AT5G39785 462 / 2e-154 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Potri.017G084200 [exp] 76 / 2e-14 AT3G01175 140 / 1e-36 Protein of unknown function (DUF1666) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07891 [flax] [poplar] DUF1666 Protein of unknown function (DUF1666)
Representative CDS sequence Show only first row Show all	>Lus10038936 pacid=23150402 polypeptide=Lus10038936 locus=Lus10038936.g ID=Lus10038936.BGIv1.0 annot-version=v1.0 ATGTCTGACGAGGAAGAAGAGGACGGAGATACGGAGGAAGAAGAAGAAGAAGAGGAAGGAGTGAGAGGAGGAGGAGGAGGACAAGAGGAGTCTTACTACC ATCATCATGTACCGCCAACGGTTGTGATCGGTACTCGAACAGATCACGATTCCCACGATTTGAATCGATTTGTGGATTTCGGTTCGGATTTTGAACCGGT CATCACCGCCAACTTGTCCTCCTTGGAGGATGATGATAGCGATGCAGAAGTGTTTTCATCAGCTCCCGACTCCTTGGGCGGTTCGGAATCTGACATACAT GTTGATCCTGCTGATGTTGTACCGGTTTCTGCTCCGAATCGAGTCAGGCCCACCTCACGGGTCACCATGAACCAGTACTACGTGAAGCAGAACTCAAGGA GGAAGAAGAAGGCAGAGGAAGAAGAATCGATGGTGGTGGACGAGAAGTTTCTGGTTTTCGAGCCGACCCAGCTGGATTCAAGGAAATATCCTCACCAAGC TTATCAGTGGAAGGACATCATCGACGCGGACGAAGAAGACGACAGGGACGAAACGGAGGAGATATTCGGGGATTCTTGCACCGTAGGGTCGACTTCAAAG AGCTCCACCGAATGGAGGAGCTCGATTAGGGATTCGGGAACGGAGTTCTCGACCTCGTCCAGGAGGAGCTGCCCCAAATGGGAATCGTACACAGTTTTCC AGAAGTACGATGAAGAAATGATCTTTCTGGATAGAATCAGTGCCCAAAAGCTTCATGAGACAGAGTCGTTAAGGTCGATAAAAGTGTGTCCAAGGTCAAT ATCAGATAGGATAGTGCACAAGATCTCAACACTAAACAAGAAACCTAATTCTGAGATGAGACAGAACCCTTACCATGAACTGGAAGCAGCATATGCAGCA CAGATATGCTTGACTTGGGAAGCACTCAACTGGAACTACATCAACTTCCAGTGGAAGAAAGCTTCCCACCGCGACTCCGATCCAGGCTGCCCTGCTCATA TTGCGCAACAGTTCCAGCAATTCCAGGTTCTTCTTCAGAGGTACATCGAGAACGAGCCTTATGAGCACGGGAGAAGGCCCGAGGTTTATGCCAGGATGAG GCTTCTGGCTCCCAAGTTGCTGCTTGTCCCTGAATACAGAGATTCTGAGGATGATCAGAGGGAAGAAGGATCAAACTCAAGAATCACATCAGCAGAGTTC CTAATGATCATGGAAGATGGGATTAAGACGTTCATGAACTTCCTAAAGGCTGACAAGGAGAAGCCATGCCAGATCATAGCATCATTCTTCAAGAGAAACA GAAGAGGATCAGTTGATCCAGCACTCCTCAATCTGGTGAAGAAGATCAACAGAAAGAAAAAGATGAAGCTGAAAGATCTAAGGAGGTCAGGCAAATGCTT GAGGAAGAGGAAGATGAAGGTGGAAGAAGAGATGGAGATACTAATGGGGTTGATAGACTTGAAGGTGGTGTCAAGGGTATTAAGAACCAGTGATCTAAGT GAGCAGCAACTCCATTGGTGTGAAGAGAAAATGAGCAGAGTAAGGTTGGTGGATCATGGCAAGCTCAAAAGAGACCCCTCCCCACTTTTCTTCCCTGCAC ATTAA
AA sequence Show only first row Show all	>Lus10038936 pacid=23150402 polypeptide=Lus10038936 locus=Lus10038936.g ID=Lus10038936.BGIv1.0 annot-version=v1.0 MSDEEEEDGDTEEEEEEEEGVRGGGGGQEESYYHHHVPPTVVIGTRTDHDSHDLNRFVDFGSDFEPVITANLSSLEDDDSDAEVFSSAPDSLGGSESDIH VDPADVVPVSAPNRVRPTSRVTMNQYYVKQNSRRKKKAEEEESMVVDEKFLVFEPTQLDSRKYPHQAYQWKDIIDADEEDDRDETEEIFGDSCTVGSTSK SSTEWRSSIRDSGTEFSTSSRRSCPKWESYTVFQKYDEEMIFLDRISAQKLHETESLRSIKVCPRSISDRIVHKISTLNKKPNSEMRQNPYHELEAAYAA QICLTWEALNWNYINFQWKKASHRDSDPGCPAHIAQQFQQFQVLLQRYIENEPYEHGRRPEVYARMRLLAPKLLLVPEYRDSEDDQREEGSNSRITSAEF LMIMEDGIKTFMNFLKADKEKPCQIIASFFKRNRRGSVDPALLNLVKKINRKKKMKLKDLRRSGKCLRKRKMKVEEEMEILMGLIDLKVVSRVLRTSDLS EQQLHWCEEKMSRVRLVDHGKLKRDPSPLFFPAH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73850			Protein of unknown function (D...		Lus10038936 [exp]	0	1
AT1G73850			Protein of unknown function (D...		Lus10027226 [exp]	1.0	0.9658
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10020750 [exp]	3.0	0.8770
AT5G66440			unknown protein		Lus10040435 [exp]	3.2	0.8381
AT5G62890			Xanthine/uracil permease famil...		Lus10029191 [exp]	3.5	0.9077
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10001056 [exp]	6.9	0.8438
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10007327 [exp]	7.3	0.8161
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Lus10017266 [exp]	10.0	0.8480
AT5G14890			NHL domain-containing protein ...		Lus10014529 [exp]	10.7	0.8462
AT1G70280			NHL domain-containing protein ...		Lus10032158 [exp]	13.0	0.8439
AT5G08350			GRAM domain-containing protein...		Lus10040999 [exp]	13.3	0.8376

Compare expression of checked genes

Lus10038936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.