Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49790 63 / 6e-11 F-box associated ubiquitination effector family protein (.1.2) AT1G47730 54 / 7e-08 F-box and associated interaction domains-containing protein (.1) AT3G10240 49 / 4e-06 F-box and associated interaction domains-containing protein (.1) AT2G30380 49 / 6e-06 Plant protein of unknown function (DUF641) (.1) AT3G04660 48 / 7e-06 F-box and associated interaction domains-containing protein (.1) AT2G21930 47 / 1e-05 F-box associated ubiquitination effector family protein (.1) AT2G43260 47 / 2e-05 F-box and associated interaction domains-containing protein (.1) AT1G46912 46 / 2e-05 F-box associated ubiquitination effector family protein (.1.2) AT4G21240 46 / 3e-05 F-box and associated interaction domains-containing protein (.1) AT5G62660 45 / 5e-05 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011210 [exp] 142 / 1e-37 AT1G32420 87 / 7e-19 F-box and associated interaction domains-containing protein (.1) Lus10003705 [exp] 137 / 5e-36 AT4G38870 72 / 1e-13 F-box and associated interaction domains-containing protein (.1) Lus10011190 [exp] 134 / 3e-34 AT1G32420 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) Lus10016866 [exp] 133 / 1e-33 AT1G32420 84 / 2e-17 F-box and associated interaction domains-containing protein (.1) Lus10018460 [exp] 128 / 3e-33 AT1G32420 66 / 9e-12 F-box and associated interaction domains-containing protein (.1) Lus10013934 [exp] 129 / 7e-33 AT1G11270 72 / 7e-14 F-box and associated interaction domains-containing protein (.1.2.3) Lus10034309 [exp] 126 / 3e-32 AT4G38870 84 / 4e-18 F-box and associated interaction domains-containing protein (.1) Lus10007285 [exp] 124 / 5e-31 AT3G04660 82 / 7e-17 F-box and associated interaction domains-containing protein (.1) Lus10007277 [exp] 122 / 1e-30 AT3G04660 82 / 6e-17 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G144000 [exp] 57 / 2e-08 AT4G38870 97 / 6e-22 F-box and associated interaction domains-containing protein (.1) Potri.001G458400 [exp] 49 / 5e-06 AT2G31470 113 / 8e-28 DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) Potri.007G074084 [exp] 47 / 1e-05 AT1G11270 83 / 1e-17 F-box and associated interaction domains-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF08268 [flax] [poplar] FBA_3 F-box associated domain
Representative CDS sequence Show only first row Show all	>Lus10038938 pacid=23150445 polypeptide=Lus10038938 locus=Lus10038938.g ID=Lus10038938.BGIv1.0 annot-version=v1.0 ATGGAGGTGCTGAAACGGGTCTACTGGGAACGGGTTAGTGAATGGATTGATGATAGCTGTGGAGAAACCAACTACGAGGATGTAGATCAGATGAAGATGA AGATAGAGGAATATGGAGGAGATGATGATTATGGGCAGGACGATGAAGAAAGGTTTGATGATGGAGAAGAAGAGGAAGAAAGATTGGAAATCCACCCTCA AGACAGATTCACACTGCAGCCGTTCGCGCCGGCCAGCTGTAGTCAGTTGAACGTCCGCAGCGTAAAGAGGGCGCAGTCGTCATTGCTTAAATGTTCGGGA CCCGTTAGAGGGTTGCTCTGTTTGGTTGACTACTTTGGGGTACGGATATTCAACCTCGGCACCGGAGAGATAACTCCATGGATCATGTCAAATGCCGGAA AGCCCAAGTTTCTCCTGGCTGATCCGCAATATTTTTTCGGATTCGATCCTATTTCTGGAAAACACAAGGTTTTCTGTCGGTGGTTTTCTTGGAAGTCCGG GACCATGACCTGTCAGTTTGAGGTGTTGACTGTAGGGGAGGACACTAGCTTTAGAGCGATTGACGAGGTACCTCCGTTTGTGGTCGGCTTCCGGAGAAAC CATGCCTGTGCGAATGGTTCGGTATATTGGCACAAGAAGACGGAGAGTTTTGAATTGACAATGGCGTTTGATTTTGGGTCCGAGAAGTTCAGGACGATCC CGATTCCTGAATTCACCCGTTTCGAGCATACTGGTGAATCATCCTCTTCAAAGGAGGCCGTGAAACGAAGATATCAAGAGGTGGCACAGAGCTATAGGCC TGGGTTCTGCCCGTCCTACAACGGATTAATAGAAATGGACGGGTGTGTAACCTTGGTACGTCGAAGGCATCAAACTGTGAAGATGTGGAAGTTTCATGAT CATAACAAGGAGGAGAATCAGAATGGTAGCAGTGGAAAAGAAGATTGGAGTGAATTGGAGGATATCAGACTGCCTGATGAGATAACTTCTGATGTCTTTA TTTACTATCACCAGGGATTTGAAGTTTGCCCGCTTTTATTCGTACAATCTGAGAGACAAGAGTTTCAGGAGGTTGAGAATCAACGAGCTGCTTTCCTTTG TTCCCGAAGAGTCTGTATGTACATGTGCATCTCTGGTTTGAGAGCTCAGCCTGAGACTCCAAGTGTTGAGGGACTGCTAAGACGCCCAACGGTGGAGATG GGCTCTGGTAACAGCCTTAGGAGATGCACACTCTTCTACTCAAAGATCCAACTATAA
AA sequence Show only first row Show all	>Lus10038938 pacid=23150445 polypeptide=Lus10038938 locus=Lus10038938.g ID=Lus10038938.BGIv1.0 annot-version=v1.0 MEVLKRVYWERVSEWIDDSCGETNYEDVDQMKMKIEEYGGDDDYGQDDEERFDDGEEEEERLEIHPQDRFTLQPFAPASCSQLNVRSVKRAQSSLLKCSG PVRGLLCLVDYFGVRIFNLGTGEITPWIMSNAGKPKFLLADPQYFFGFDPISGKHKVFCRWFSWKSGTMTCQFEVLTVGEDTSFRAIDEVPPFVVGFRRN HACANGSVYWHKKTESFELTMAFDFGSEKFRTIPIPEFTRFEHTGESSSSKEAVKRRYQEVAQSYRPGFCPSYNGLIEMDGCVTLVRRRHQTVKMWKFHD HNKEENQNGSSGKEDWSELEDIRLPDEITSDVFIYYHQGFEVCPLLFVQSERQEFQEVENQRAAFLCSRRVCMYMCISGLRAQPETPSVEGLLRRPTVEM GSGNSLRRCTLFYSKIQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49790			F-box associated ubiquitinatio...		Lus10038938 [exp]	0	1
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10014398 [exp]	18.3	0.8413
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10020514 [exp]	23.7	0.8374
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Lus10000490 [exp]	43.6	0.8347
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10027567 [exp]	44.0	0.7948
AT2G13650		GONST1	golgi nucleotide sugar transpo...		Lus10005387 [exp]	49.3	0.8125
AT1G79790		AtcpFHy1	flavin mononucleotide hydrolas...		Lus10009551 [exp]	103.2	0.8151
AT1G61240			Protein of unknown function (D...		Lus10018456 [exp]	140.5	0.8030
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10032246 [exp]	166.0	0.7924
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	176.4	0.7670
AT5G01470			S-adenosyl-L-methionine-depend...		Lus10002489 [exp]	185.9	0.7890

Compare expression of checked genes

Lus10038938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.