Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73830 186 / 5e-58 bHLH bHLH050, BEE3 BR enhanced expression 3 (.1.2) AT1G18400 182 / 2e-56 bHLH bHLH044, BEE1 BR enhanced expression 1 (.1) AT1G25330 156 / 6e-47 bHLH HAF, bHLH075, CESTA HALF FILLED, CESTA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G50915 125 / 3e-34 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G07340 127 / 6e-34 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G26260 125 / 1e-33 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT1G68920 125 / 8e-33 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT5G48560 123 / 5e-32 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G23690 120 / 1e-31 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G34530 115 / 5e-30 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009673 [exp] 204 / 2e-65 AT1G73830 204 / 1e-65 BR enhanced expression 3 (.1.2) Lus10009034 [exp] 192 / 2e-60 AT1G73830 186 / 2e-58 BR enhanced expression 3 (.1.2) Lus10023562 [exp] 121 / 2e-32 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10017602 [exp] 118 / 4e-32 AT1G18400 122 / 7e-34 BR enhanced expression 1 (.1) Lus10033562 [exp] 117 / 5e-32 AT1G18400 121 / 5e-34 BR enhanced expression 1 (.1) Lus10040448 [exp] 120 / 6e-32 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Lus10013052 [exp] 123 / 7e-32 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10029110 [exp] 122 / 9e-32 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10003172 [exp] 119 / 1e-31 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G055700 [exp] 219 / 6e-71 AT1G73830 216 / 1e-69 BR enhanced expression 3 (.1.2) Potri.015G046300 [exp] 216 / 8e-70 AT1G18400 192 / 3e-60 BR enhanced expression 1 (.1) Potri.017G115300 [exp] 156 / 2e-46 AT1G25330 151 / 4e-45 HALF FILLED, CESTA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G099400 [exp] 153 / 3e-45 AT1G18400 152 / 7e-45 BR enhanced expression 1 (.1) Potri.012G104900 [exp] 126 / 4e-34 AT5G50915 177 / 3e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.002G248500 [exp] 125 / 1e-32 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G136100 [exp] 125 / 2e-32 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.014G148900 [exp] 124 / 4e-32 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G113200 [exp] 123 / 8e-32 AT1G68920 388 / 1e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.015G104200 [exp] 120 / 1e-31 AT5G50915 163 / 9e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10038939 pacid=23150607 polypeptide=Lus10038939 locus=Lus10038939.g ID=Lus10038939.BGIv1.0 annot-version=v1.0 ATGGCTGAATTTACAGCAGATTTCAGACCCTCAATGTTCCAAATTGATCCCAACACCACCATTGATCACCAAATCCCCCAATTCACCGCCATCAACCATA ATGGATTCAACTTCATCACTCCAATTCTCCATTCCAATGATGATCAGCATCAGCAGAGCTTCTTCGAATTCGGTTACCCCGAAACCGATGGCTCCTTCCA CCCCCTCCATAACTACATGGATGTGCCTCTTGATCAAGCCATTGTAGGAGATGATCATCATCAACAGTTTGTTGTAGATCATGGCTGCAGGAAGAGGAAG TCTTTGGCAATGGTGGATCAAAGCAGCTCTATCAACACTACTGACATCATCATGTCTCCTCAGGGATCTGACAACAAGAGGAAAAAAAATAGTTCAAAGG GGAAGAGAGTTAGAAGCAATGACGAGGCAGATCAGAAACAGAAGGGAGTTGTTCATGTTAGAGCAAGAAGAGGGCAAGCTACTGACAGCCATAGTATTGC AGAAAGGGTTAGAAGAGGCAAAATCAACGACAGGCTCCGATGCTTACAGAACATCGTTCCTGGTTGCTATAAGCAGACGATGGGGATGGCGGTGATGTTG GACGAGATAATTAACTACGTGCAATCGCTTCAGAATCAAGTCGAATTTCTGTCAATGAAGCTCACAGCAGCAAGCACATTCTATGATTTCAATGCAGAGG CAGAAGATGTTGAGACATTACAGAGGGCAAAGTTGCAAGAAGCGAAGGAGCAAGAGAGAGTGATGAAGGAAGGATATGGAGGATTTTCATGTTACCCATC AACTAATTGGTCCCTTTGA
AA sequence Show only first row Show all	>Lus10038939 pacid=23150607 polypeptide=Lus10038939 locus=Lus10038939.g ID=Lus10038939.BGIv1.0 annot-version=v1.0 MAEFTADFRPSMFQIDPNTTIDHQIPQFTAINHNGFNFITPILHSNDDQHQQSFFEFGYPETDGSFHPLHNYMDVPLDQAIVGDDHHQQFVVDHGCRKRK SLAMVDQSSSINTTDIIMSPQGSDNKRKKNSSKGKRVRSNDEADQKQKGVVHVRARRGQATDSHSIAERVRRGKINDRLRCLQNIVPGCYKQTMGMAVML DEIINYVQSLQNQVEFLSMKLTAASTFYDFNAEAEDVETLQRAKLQEAKEQERVMKEGYGGFSCYPSTNWSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Lus10038939 [exp]	0	1
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10007594 [exp]	5.9	0.8943
AT5G14360			Ubiquitin-like superfamily pro...		Lus10014884 [exp]	6.3	0.8863
AT3G29810		COBL2	COBRA-like protein 2 precursor...		Lus10042386 [exp]	7.1	0.8939
					Lus10030905 [exp]	8.5	0.8904
					Lus10017966 [exp]	11.5	0.8805
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10024171 [exp]	13.6	0.8835
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Lus10003492 [exp]	17.9	0.8626
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030904 [exp]	19.1	0.8630
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10025198 [exp]	20.0	0.8666
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Lus10042303 [exp]	20.9	0.8417

Compare expression of checked genes

Lus10038939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.