Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23180 336 / 1e-109 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT1G70740 326 / 6e-109 Protein kinase superfamily protein (.1.2) AT4G11490 325 / 7e-106 CRK33 cysteine-rich RLK (RECEPTOR-like protein kinase) 33 (.1) AT4G21390 330 / 1e-105 B120 S-locus lectin protein kinase family protein (.1) AT4G23230 318 / 7e-105 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G00970 322 / 1e-104 CRK41 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (.1) AT4G00960 313 / 1e-104 Protein kinase superfamily protein (.1) AT1G11340 328 / 2e-104 S-locus lectin protein kinase family protein (.1) AT3G45860 321 / 7e-104 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1) AT4G23140 320 / 2e-103 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009631 [exp] 507 / 3e-180 AT4G21390 343 / 2e-115 S-locus lectin protein kinase family protein (.1) Lus10027230 [exp] 444 / 1e-155 AT4G21390 278 / 2e-90 S-locus lectin protein kinase family protein (.1) Lus10007632 [exp] 332 / 4e-108 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 327 / 3e-106 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10018382 [exp] 327 / 3e-106 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10006745 [exp] 325 / 3e-105 AT1G11340 774 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018408 [exp] 330 / 5e-105 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007602 [exp] 327 / 5e-105 AT1G65800 788 / 0.0 receptor kinase 2 (.1) Lus10020083 [exp] 315 / 6e-105 AT4G21390 427 / 6e-143 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G055500 [exp] 498 / 4e-177 AT4G23180 364 / 2e-120 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024632 [exp] 338 / 3e-114 AT4G23180 527 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G028701 [exp] 351 / 3e-113 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G028400 [exp] 343 / 1e-112 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G028600 [exp] 347 / 2e-112 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 347 / 4e-112 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G027900 [exp] 340 / 4e-112 AT4G23180 542 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025200 [exp] 342 / 6e-112 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023550 [exp] 341 / 1e-111 AT4G05200 541 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G026100 [exp] 340 / 3e-111 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10038940 pacid=23150328 polypeptide=Lus10038940 locus=Lus10038940.g ID=Lus10038940.BGIv1.0 annot-version=v1.0 ATGCGCCTAATCTCCACCTTCTTCCGATGGCTCGCCGCGAAAATCGATTCTCGTCTTGCCAAGCCGTCGGACGGTGATCGTTCCGACGCCGCCGCCTCTT CCGACCTCTTCTTCGATCTCCACACCCTTCACGTCGCCACCAATTTCTTCTCTGACCTCAACCAGCTCGGCCACGGCGGCTTTGGTCCTGTCTACAAGGG GTTGATGCCGGACGGGCAAGAAGTCGCGGTGAAGAAGCTATCGTTGAATTCGCGACAAGGACTAACCGAATTCACCAACGAGGTGAAGCTACTGTTAAAG ATCCAGCACAAGAATCTGGTCACATTGCTAGGCTGCTGCGCAGAAGGACCAGAAAAGATGCTCGTCTACGAGTATCTTCCAAACAAAAGCCTCGATTACT TCCTCTTCGGTAAGAACAAAGATTCCTTGGATTGGGAGAAGAGATTCCGAATCATTACAGGAGTGGCTCGGGGGATTCTGTACCTCCACGAAGAAGCTCC GGTGAGGATCATACACAAAGACATCAAAGCCAGTAACATACTGCTGGATTCGAGGATGAATGCGAAGATATCGGATTTCGGACTTGCCAGGATGTTTTCG GAGGATGATACTCATGTGAAGACATTCAGTATATCTGGTACTCCTGGCTATATGGCACCGGAGTATACGATGCGGGGGTATCTTTCCGTCAAAACTGATG TGTTCAGTTACGGTATCCTTGTATTGGAGATTGTGGGCGGGAGGAAGAATCTCGATCCCGGACTTGGTCAGGATGGTGGTGATCTTTTGAGTTATGCATG GAAACTCTACCAAGCGGGAAACACACTCGAACTAGTTGACCGGGCCCTTGAAGACAAATACAACCGCGATGAAGTCGCGATGTGCATTCAAATAGGGCTT CTATGCTGCCAGCAGACTGTGATCGATAGGCCGGACATGAACTCGGTTGACCTCATGCTCTCGAGTGACTCGTTTACCCTGCCCGAACCGGGTAAGCCAG GAATGCAAGGCAGGGTAGTAAGATGGATGCCAACTAGTACTGAGGGAACCACTTCGGGTTTGACTAATGCTGGGACTACGAGATCCGGTGTCATCGGAGG GAACGACAATTATTTCTCACGTAACTCCATCTCTGTTTCCTCCTTTGATGAAGGTAGATGA
AA sequence Show only first row Show all	>Lus10038940 pacid=23150328 polypeptide=Lus10038940 locus=Lus10038940.g ID=Lus10038940.BGIv1.0 annot-version=v1.0 MRLISTFFRWLAAKIDSRLAKPSDGDRSDAAASSDLFFDLHTLHVATNFFSDLNQLGHGGFGPVYKGLMPDGQEVAVKKLSLNSRQGLTEFTNEVKLLLK IQHKNLVTLLGCCAEGPEKMLVYEYLPNKSLDYFLFGKNKDSLDWEKRFRIITGVARGILYLHEEAPVRIIHKDIKASNILLDSRMNAKISDFGLARMFS EDDTHVKTFSISGTPGYMAPEYTMRGYLSVKTDVFSYGILVLEIVGGRKNLDPGLGQDGGDLLSYAWKLYQAGNTLELVDRALEDKYNRDEVAMCIQIGL LCCQQTVIDRPDMNSVDLMLSSDSFTLPEPGKPGMQGRVVRWMPTSTEGTTSGLTNAGTTRSGVIGGNDNYFSRNSISVSSFDEGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10038940 [exp]	0	1
AT4G03965			RING/U-box superfamily protein...		Lus10015152 [exp]	2.6	0.9628
AT1G06840			Leucine-rich repeat protein ki...		Lus10034445 [exp]	5.1	0.9517
AT1G09080		BIP3	binding protein 3, Heat shock ...		Lus10026485 [exp]	5.2	0.9437
AT2G36950			Heavy metal transport/detoxifi...		Lus10022617 [exp]	6.0	0.9618
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10038086 [exp]	8.5	0.9572
AT4G32650		AtLKT1, KAT3, A...	A. thaliana low-K+-tolerant 1,...		Lus10037904 [exp]	8.9	0.9552
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10042516 [exp]	9.7	0.9625
AT3G25910			Protein of unknown function (D...		Lus10019436 [exp]	10.1	0.9492
AT1G44770			unknown protein		Lus10034500 [exp]	10.6	0.9548
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Lus10033721 [exp]	12.2	0.9522

Compare expression of checked genes

Lus10038940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.