Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15220 212 / 2e-71 ATCCMH cytochrome c biogenesis protein family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027231 [exp] 332 / 6e-119 AT1G15220 212 / 2e-71 cytochrome c biogenesis protein family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G052000 [exp] 241 / 4e-83 AT1G15220 216 / 8e-73 cytochrome c biogenesis protein family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03918 [flax] [poplar] CcmH Cytochrome C biogenesis protein
Representative CDS sequence Show only first row Show all	>Lus10038941 pacid=23150433 polypeptide=Lus10038941 locus=Lus10038941.g ID=Lus10038941.BGIv1.0 annot-version=v1.0 ATGGAGAACAAAAGCGATGATGAAGTTAAGAACTCGCGAATTATGGAGGCTCGTGCCAGAAACATTAGTCATAACGTCAGGTGCACCGAGTGCGGGAGTC AGTCCATTGAAGATTCTCAAGCTGACATTGCCGTTCTCCTCAGGAAGTTGATCCGTGAGGAGGTCCAGGCTGGAAAATCCGACAAAGAGATCTTCAAGAA GCTAGAGGATGAATTTGGAGAGACGGTTCTCTACGCACCGAAGTTCGATTGGCAGACTGCTGGGATATGGCTATCACCACTTTTGATTGTAGGTACTGCT GGAGGGATATGGGCTTACGGAAAGCACAGGCAGAATACTAATGTGCATATCATGGCACTAAATCTCGTGAGGGGCGTTACGCTAACACCAAAAGAGAAGG AGACGATGCTGGAGATTCTAACGCCTCCTCCCCCACAAAGAGCCCCTCTTCTTCTGTCCTGGTGGAGGAAAATGATAACGTGA
AA sequence Show only first row Show all	>Lus10038941 pacid=23150433 polypeptide=Lus10038941 locus=Lus10038941.g ID=Lus10038941.BGIv1.0 annot-version=v1.0 MENKSDDEVKNSRIMEARARNISHNVRCTECGSQSIEDSQADIAVLLRKLIREEVQAGKSDKEIFKKLEDEFGETVLYAPKFDWQTAGIWLSPLLIVGTA GGIWAYGKHRQNTNVHIMALNLVRGVTLTPKEKETMLEILTPPPPQRAPLLLSWWRKMIT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15220		ATCCMH	cytochrome c biogenesis protei...		Lus10038941 [exp]	0	1
AT1G09630		ATRAB-A2A, ATRA...	ARABIDOPSIS RAB GTPASE A2A, RA...		Lus10036441 [exp]	6.3	0.6511
AT1G26100			Cytochrome b561/ferric reducta...		Lus10021715 [exp]	11.5	0.6743
					Lus10025143 [exp]	13.8	0.6746
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10032748 [exp]	21.1	0.6727
AT1G19240			unknown protein		Lus10034891 [exp]	26.7	0.6662
AT3G52040			unknown protein		Lus10005332 [exp]	28.9	0.6282
AT3G42150			unknown protein		Lus10011614 [exp]	33.0	0.6172
AT3G12550		FDM3	factor of DNA methylation 3, X...		Lus10000950 [exp]	50.3	0.5981
AT5G23050		AAE17	acyl-activating enzyme 17 (.1)		Lus10027257 [exp]	84.0	0.5898
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10035462 [exp]	88.7	0.5569

Compare expression of checked genes

Lus10038941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.