Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44000 159 / 2e-45 Glutathione S-transferase family protein (.1) AT4G19880 89 / 8e-20 Glutathione S-transferase family protein (.1.2.3) AT5G45020 82 / 2e-17 Glutathione S-transferase family protein (.1.2) AT5G44990 69 / 3e-13 Glutathione S-transferase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027233 [exp] 385 / 5e-133 AT5G44000 508 / 2e-180 Glutathione S-transferase family protein (.1) Lus10014304 [exp] 86 / 1e-18 AT4G19880 499 / 3e-179 Glutathione S-transferase family protein (.1.2.3) Lus10036209 [exp] 81 / 4e-17 AT4G19880 580 / 0.0 Glutathione S-transferase family protein (.1.2.3) Lus10038348 [exp] 81 / 6e-17 AT4G19880 580 / 0.0 Glutathione S-transferase family protein (.1.2.3) Lus10005510 [exp] 62 / 7e-11 AT4G19880 162 / 3e-48 Glutathione S-transferase family protein (.1.2.3) Lus10003994 [exp] 42 / 0.0004 AT5G02790 324 / 5e-113 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Lus10015049 [exp] 41 / 0.0007 AT5G02790 322 / 3e-112 Glutathione transferase L3, Glutathione S-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G192300 [exp] 171 / 2e-49 AT5G44000 493 / 2e-174 Glutathione S-transferase family protein (.1) Potri.015G121600 [exp] 87 / 6e-19 AT4G19880 600 / 0.0 Glutathione S-transferase family protein (.1.2.3) Potri.016G083500 [exp] 43 / 0.0001 AT5G02790 340 / 2e-119 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Potri.008G046800 [exp] 41 / 0.001 AT3G55040 318 / 4e-109 glutathione transferase lambda 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038943 pacid=23150575 polypeptide=Lus10038943 locus=Lus10038943.g ID=Lus10038943.BGIv1.0 annot-version=v1.0 ATGTACTTGACCGGCGGTGCTAATCTACAGACCAGCTATCGCTCTCCGGTGACCTCGTCGCCAGTACGAGCACGAATGTCTCTGAACCGAAATCCCCAGC CCGTGAATCCGACGGCGAGCCTCCTCACCATTGTGACGAAGCTCCTGTGGGGTCCCTCACTTCCGCCGGGACTGCTCATCTCCACCGTCCGTACGGGGTG GAGCACGGCCTGGAACCTGATGATGTCCCAGCTAGCTCCGTCCGATCCCTCCGTCAATTACTCCAGACCTCCTTCCAAATTCCGCCTTGGTCCAAAACCG GGCCCGCCATTTTCGGGCAACCTCCAGCTGTATGTCGGCCTCCCCTGTCCCTGGGCTCACCGCACCCTCATCGTCCGAGCCCTGAAAGGACTCCAAAACG CGATCCCTATCTCGATCACGGCGCCGGGCCAAGACGGCTCGTGGGAGTTCTCTTCCGGAGAGAACAGTGCCCTCGGCGACGTGCTTGTGCCGGGGAAGGA TAGCTCTAACAGATGCAGGACGTTGAAGGAGGTTTACGGCCGGGATAGCAACGGTGCCGATGCTGTGGGACTCGGCGAGGAAAGAGGTGCGGATTTGCTC AGAGTCGAGAAGGTACGACAAATCGGTAAACGATCTGTTCGAAGCGCTGGAAAAAGTCGAGGAACACCTCAAGGCATCCCACTATTTATGCGGCGGAAGC TGACACTTGCGGATGTGTGCCTGTTTTCGACGTTGATTAGGTTCGATCCGGTGTACAATGTTCTGTTCAAGTGTACCAAGAAGAGACTGGTTGAGTACCT GAATCTCCATGGCTATATGCGCGATATTTACCAGATGCCAAAGGTTGCAGAAACCTGCAATTTTGGTGCTATCATGGATGGCTACTACAGAACACTGTTT CCGTTGAACCCGGGAGGCATCTGCCCCACTGTGCCTTTGGGGTCGGAGATTCAGAATCTCTCTAAACCACACAACAGGGAATCTCTGTCTTCTGCAGATT TGAAGAGTTCGGGAGTCTTGTGCTCATAA
AA sequence Show only first row Show all	>Lus10038943 pacid=23150575 polypeptide=Lus10038943 locus=Lus10038943.g ID=Lus10038943.BGIv1.0 annot-version=v1.0 MYLTGGANLQTSYRSPVTSSPVRARMSLNRNPQPVNPTASLLTIVTKLLWGPSLPPGLLISTVRTGWSTAWNLMMSQLAPSDPSVNYSRPPSKFRLGPKP GPPFSGNLQLYVGLPCPWAHRTLIVRALKGLQNAIPISITAPGQDGSWEFSSGENSALGDVLVPGKDSSNRCRTLKEVYGRDSNGADAVGLGEERGADLL RVEKVRQIGKRSVRSAGKSRGTPQGIPLFMRRKLTLADVCLFSTLIRFDPVYNVLFKCTKKRLVEYLNLHGYMRDIYQMPKVAETCNFGAIMDGYYRTLF PLNPGGICPTVPLGSEIQNLSKPHNRESLSSADLKSSGVLCS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44000			Glutathione S-transferase fami...		Lus10038943 [exp]	0	1
AT3G52170			DNA binding (.1.2)		Lus10028828 [exp]	3.0	0.7701
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Lus10038276 [exp]	3.2	0.7701
AT5G53080			Tetratricopeptide repeat (TPR)...		Lus10022387 [exp]	16.6	0.7637
AT4G36050			endonuclease/exonuclease/phosp...		Lus10041907 [exp]	21.3	0.6725
AT3G19508			unknown protein		Lus10013875 [exp]	24.5	0.6857
AT2G40920			F-box and associated interacti...		Lus10020082 [exp]	26.3	0.7181
AT5G43822			Pentatricopeptide repeat (PPR)...		Lus10030735 [exp]	27.9	0.6998
AT5G27460			Tetratricopeptide repeat (TPR)...		Lus10020948 [exp]	30.7	0.7397
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Lus10003896 [exp]	38.7	0.7100
AT3G08000			RNA-binding (RRM/RBD/RNP motif...		Lus10015146 [exp]	39.3	0.6864

Compare expression of checked genes

Lus10038943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.