Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38640 664 / 0 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT1G48970 639 / 0 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT2G44070 512 / 3e-179 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT3G07300 88 / 3e-18 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) AT1G72340 84 / 5e-17 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT1G53900 82 / 5e-16 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53880 82 / 5e-16 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT2G05830 48 / 2e-05 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027234 [exp] 1186 / 0 AT5G38640 704 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Lus10002762 [exp] 88 / 2e-18 AT3G07300 624 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Lus10016349 [exp] 87 / 7e-18 AT3G07300 624 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Lus10003938 [exp] 79 / 2e-15 AT1G53900 597 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Lus10037451 [exp] 76 / 4e-15 AT1G53900 479 / 6e-172 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Lus10008417 [exp] 50 / 3e-06 AT2G05830 543 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4) Lus10001970 [exp] 47 / 3e-05 AT2G05830 538 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G059300 [exp] 829 / 0 AT5G38640 693 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.017G111800 [exp] 655 / 0 AT5G38640 775 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.004G103700 [exp] 653 / 0 AT5G38640 792 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.001G026100 [exp] 86 / 1e-17 AT3G07300 632 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.T126106 [exp] 83 / 1e-16 AT3G07300 595 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.003G072100 [exp] 82 / 1e-16 AT1G53900 587 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Potri.003G199301 [exp] 82 / 2e-16 AT3G07300 595 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.001G163300 [exp] 82 / 2e-16 AT1G53900 589 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Potri.010G068600 [exp] 82 / 3e-16 AT3G07300 482 / 3e-170 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.006G219900 [exp] 45 / 0.0002 AT2G05830 526 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [flax] [poplar] ISOCOT_Fold PF01008 [flax] [poplar] IF-2B Initiation factor 2 subunit family
Representative CDS sequence Show only first row Show all	>Lus10038944 pacid=23150446 polypeptide=Lus10038944 locus=Lus10038944.g ID=Lus10038944.BGIv1.0 annot-version=v1.0 ATGGACCCTCGTCGAGGCTCGCTCCCAGTTCCCAGAGTTCGCCAGGTCGGATTCTTCACTCCCAACGCTGCTCCGCTCCCGACCCGATCCCAATCGGGCC CTCCCAATCCGAGCTCGCCTCCGCTCTCCGATTCTCCAGCCAGCAACTCCTTGTCTCCCGTCATGATCCCTCCCGCCCGTCACAACTCCGACAACCTGAC GCACCGACCGACCTCTCCTCTCCCCGTGCCTGAACCCTCGCATTTCCGCCGCCGTGGTGGCGAAAACGACTCCGGCCCGGTGGTTGGTAGCTACAATCCC GCTGACACCTTACTCGGTATGTCTCCGCCGCCTACTAGGTCGCCTTCTACTCACATCGGCGACGGGGAGTTCACTGAGGAGACTGCCACGTCGTCCTCTC CTGGTTGGTTTCGGCGGAACAATTCCGCGAAATTGGCTTCGAGTTTGCCCAATGGCGGCATTAACTTCGCGTCTTTTAAGTCAGCGGCTGAGAATTTGGT CCCCGTGGCTCAGAATTCGGTTAGAATTTCTGAAAAGACTGCTCCAAAGCAACAAACTGAGAGCAGCTCTAAACAAGAGAAACCGAAACTCTCGAAAGGG GAGCGACGTGCATTGCAGGAGTCTCAGCGTGCTGCAAAGGCTGCTGCAAAAGCCACTGGTGGGAAAGCTGCTACTGTCTCTGAAGGGGTGACAGCTGCTA AACCAGTGGAGCAGCAGCAAACACATAAGAAAGATGCTTCTCAGGCTGCTGTATCAGTATCAGCACCTTCTGAAAGGAAAGGTTCTCAAGAGAAAGAGAG AAGAAAAGATGCCCCACCACCTCGAATGCAATATGACGACAAAGGTCGTGTTGAGAAGGCTAAGAGGCGTTCAGTGGTTAATCAAACTGAAGCGAGAAAT CGGGTTGAATTGTTTCGTCATTTGCCTCAGTATGAACATGGCACTCAGCTTTCAGATCTGGAGGCAAAGCACTTGCAACATCCTATGCACCCTGCAATTT ACAAGGTTGGATTGCAGTATCTTTCTGGAGATGTTTCTGGGGGTAATGCTCGCTGCATCGCGATGCTCAAGGCATTTCAAGAATTCATTAGAGACTACTC TACTCCATCCGAGAAGGTTTTCACCAGAGACCTAACTGCCAAAATCAGCAGTCAAGTCTCGTTCTTCACCGAATGCAGACCACTGTCCATGAGCATGGGC AACGCGATTAGGTTTCTGAAGAATCGGATTGCCAAGCTGCCGTTGTCTTTTTCAGAATCAGAATCAAAAGCCTCCCTGTGTGATGACATTGATCGTTTCA TCGCTGAGAAAATTGTGCTTGCTGACCGAGCCATAGTTTCACACGCTATTTCAAAAGTGAAGGACGGCGATGTCCTCCTGGTATATGGATCGTCGTGCGT GGTTGAGATGATTCTCTTACAGTCTCATGAACTCGGGAAAAAGTTCCGTGTTCTCATAGTAGACTCTCGTCCCAAACTTGAAGGGAAAGCTCTGCTCCGT AGGCTTGTGACAAAGGGCCTGCAGTGTACATACACTCACATAAACGCTGTTTCTTACGTCATGCACGAAGTAACGAAAGTCTTCCTCGGTGCCTCTTCAG TCTTGTCTAATGGCACGGTATACTCGAGGGTTGGCACTGCTTGCGTTGCAATGGTTGCCCATGCGTTCCGAATTCCTGTCATAATATGTTGCGAAGCTTA TAAATTTCATGAAAGGGTACAGATTGACTCAATTTGTTCAAATGAGCTAGGTGATCCTGATGCTATTGCCAAGGTTCCTGGAAGAATGGACATAAAAAAC CTCGATGATCTTTCCAAGACCGACAATCTTCAGCTTCTTAACTTGATGTACGATGCTACTCCTTCGGACTATATATCCATGATCATTACAGACTACGGCA TGATACCACCAACGAGCGTCGCGGTGATCGTTCGAGAAGTGGGTGTTAGCACTATTTGGTAG
AA sequence Show only first row Show all	>Lus10038944 pacid=23150446 polypeptide=Lus10038944 locus=Lus10038944.g ID=Lus10038944.BGIv1.0 annot-version=v1.0 MDPRRGSLPVPRVRQVGFFTPNAAPLPTRSQSGPPNPSSPPLSDSPASNSLSPVMIPPARHNSDNLTHRPTSPLPVPEPSHFRRRGGENDSGPVVGSYNP ADTLLGMSPPPTRSPSTHIGDGEFTEETATSSSPGWFRRNNSAKLASSLPNGGINFASFKSAAENLVPVAQNSVRISEKTAPKQQTESSSKQEKPKLSKG ERRALQESQRAAKAAAKATGGKAATVSEGVTAAKPVEQQQTHKKDASQAAVSVSAPSERKGSQEKERRKDAPPPRMQYDDKGRVEKAKRRSVVNQTEARN RVELFRHLPQYEHGTQLSDLEAKHLQHPMHPAIYKVGLQYLSGDVSGGNARCIAMLKAFQEFIRDYSTPSEKVFTRDLTAKISSQVSFFTECRPLSMSMG NAIRFLKNRIAKLPLSFSESESKASLCDDIDRFIAEKIVLADRAIVSHAISKVKDGDVLLVYGSSCVVEMILLQSHELGKKFRVLIVDSRPKLEGKALLR RLVTKGLQCTYTHINAVSYVMHEVTKVFLGASSVLSNGTVYSRVGTACVAMVAHAFRIPVIICCEAYKFHERVQIDSICSNELGDPDAIAKVPGRMDIKN LDDLSKTDNLQLLNLMYDATPSDYISMIITDYGMIPPTSVAVIVREVGVSTIW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38640			NagB/RpiA/CoA transferase-like...		Lus10038944 [exp]	0	1
AT5G38640			NagB/RpiA/CoA transferase-like...		Lus10027234 [exp]	1.0	0.9346
AT1G50380			Prolyl oligopeptidase family p...		Lus10015387 [exp]	5.1	0.8718
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10016751 [exp]	6.7	0.8614
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025336 [exp]	6.9	0.8666
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10042358 [exp]	8.9	0.8232
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10022445 [exp]	10.0	0.8281
AT2G33730			P-loop containing nucleoside t...		Lus10031509 [exp]	12.1	0.8404
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10013991 [exp]	20.6	0.8333
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10027408 [exp]	21.2	0.8306
AT3G02490			Pentatricopeptide repeat (PPR)...		Lus10032092 [exp]	25.7	0.8451

Compare expression of checked genes

Lus10038944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.