Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48960 171 / 7e-54 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027236 [exp] 285 / 2e-98 AT1G48960 231 / 5e-77 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G059100 [exp] 181 / 9e-58 AT1G48960 175 / 3e-55 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10038945 pacid=23150327 polypeptide=Lus10038945 locus=Lus10038945.g ID=Lus10038945.BGIv1.0 annot-version=v1.0 ATGGAAGTGCGGAAAATAGTGGTGGTGGTAGAAGATGTAGAGGCATCGAGAACCGCCCTCCGATGGGCACTCCACAATTTCCTCCGCCATGGCGATGTAT TGACTCTCCTCCATGTTTACTCCAAGCAAAAGAAGAAGAATAAGAAGAAGCGGCTTCTCCGCCTGCAAGGCTTCCAGCTGGCGCTCTCTTTCAAAGACAT CTGCAACTCCTCCTCCTTCTTCAATACGAATGTGGAGATAATAGTGACGGAAGGGGAAGATGAAGGTGGGAAGATCGGGGAGATCGTGAGGGGGATTGGT GCTTCTGCGATTGTTGTTGGTCTCCATGATCGAAGCTTCATGTACAGGCTGGCAATGACACATACCAACGTAGCAAGCAACTTCAATTGCAGGGTGCTCG CAATCAAACACCCAACAATATCAAAACCCAACACCAGAACAAACAGCAGCAGCAGCTGGGCCAGTTCTTCAGCCACGCCATCTCCAATGTCGGATTGCCA CCATAACTTGGATGTTTCCCAGATCGAAATCGGCAGGCTAGAGGTTCCTGAAACTCCATCGCCTAGAATTCCTTACAGAGTATGCCCTGACCCTTATTCG ATACTGTGGAGATGGAAGAAGAGGAGGAAGCACTAA
AA sequence Show only first row Show all	>Lus10038945 pacid=23150327 polypeptide=Lus10038945 locus=Lus10038945.g ID=Lus10038945.BGIv1.0 annot-version=v1.0 MEVRKIVVVVEDVEASRTALRWALHNFLRHGDVLTLLHVYSKQKKKNKKKRLLRLQGFQLALSFKDICNSSSFFNTNVEIIVTEGEDEGGKIGEIVRGIG ASAIVVGLHDRSFMYRLAMTHTNVASNFNCRVLAIKHPTISKPNTRTNSSSSWASSSATPSPMSDCHHNLDVSQIEIGRLEVPETPSPRIPYRVCPDPYS ILWRWKKRRKH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48960			Adenine nucleotide alpha hydro...		Lus10038945 [exp]	0	1
AT1G79160			unknown protein		Lus10031755 [exp]	1.7	0.9023
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10002917 [exp]	2.0	0.9223
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10033392 [exp]	6.3	0.9097
AT2G21120			Protein of unknown function (D...		Lus10010893 [exp]	6.9	0.9005
AT1G63855			Putative methyltransferase fam...		Lus10041869 [exp]	14.5	0.8744
AT5G02580			Plant protein 1589 of unknown ...		Lus10025300 [exp]	19.7	0.8599
AT2G21120			Protein of unknown function (D...		Lus10012716 [exp]	22.8	0.8845
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Lus10001365 [exp]	23.8	0.8444
AT5G18150			Methyltransferase-related prot...		Lus10020287 [exp]	26.3	0.8895
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10039599 [exp]	34.4	0.8898

Compare expression of checked genes

Lus10038945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.