Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18580 227 / 7e-76 Nucleic acid-binding, OB-fold-like protein (.1) AT4G11060 95 / 4e-24 MTSSB mitochondrially targeted single-stranded DNA binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027237 [exp] 313 / 2e-109 AT3G18580 278 / 1e-95 Nucleic acid-binding, OB-fold-like protein (.1) Lus10031482 [exp] 99 / 1e-24 AT4G11060 277 / 4e-94 mitochondrially targeted single-stranded DNA binding protein (.1) Lus10015200 [exp] 95 / 4e-24 AT4G11060 202 / 2e-66 mitochondrially targeted single-stranded DNA binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G058800 [exp] 197 / 7e-64 AT3G18580 261 / 2e-88 Nucleic acid-binding, OB-fold-like protein (.1) Potri.013G011800 [exp] 93 / 3e-23 AT4G11060 279 / 2e-96 mitochondrially targeted single-stranded DNA binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00436 [flax] [poplar] SSB Single-strand binding protein family
Representative CDS sequence Show only first row Show all	>Lus10038946 pacid=23150437 polypeptide=Lus10038946 locus=Lus10038946.g ID=Lus10038946.BGIv1.0 annot-version=v1.0 ATGGCGGCAACTTCGATCGCAACCATTTCCCGCAGGCTCTTCCGCTCCATTCTCTCAAACCCCAACATCCCTCACGCTTCCGTCCCCTTGTGCACAACCA CCGCCTCATCTCCCGAGATCGACCCGGACTCCATCAACCCAGACGCCGATCCAATCCCCAGCTCCTCCGCCACTGCTGACTCTCCACCGTCGACACCGCC TCCCAATTCTAACGAACGAGTCGCGATAATGGTGGGGCAAGTTGGGCAGAGTCCGTTTCAGAAGAAGCTGAAAGGGGGAAGAACGGTGACTCTGCTCTCC GTGGGAACTGGTGGGATTAGGAATTATCGAAGGCCGTTGGAGAGTGAGGAGCCCAGGGATTATGCGAATCGGTGTACTATTCAGTGGCATCGTGTGTCTG TTTACCCGGAGAGATTGGGTGATCTTGTGATGAAGGAAGTTGTTCCCGGGTCAAATGTCTATCTGGAAGGAAACCTGGAGACAAAGATATTTACTGATCC AGTCACCGGTCTCGTGCGGCATGTAAGAGAGATTGCTATTCGTGGCAACGGCCGAATCGTGTCGTTGGGAGGCGATGGCACCACCCCTGGAGCTTCAGGG TTGAAAGGAGTCGGCTATTACTAG
AA sequence Show only first row Show all	>Lus10038946 pacid=23150437 polypeptide=Lus10038946 locus=Lus10038946.g ID=Lus10038946.BGIv1.0 annot-version=v1.0 MAATSIATISRRLFRSILSNPNIPHASVPLCTTTASSPEIDPDSINPDADPIPSSSATADSPPSTPPPNSNERVAIMVGQVGQSPFQKKLKGGRTVTLLS VGTGGIRNYRRPLESEEPRDYANRCTIQWHRVSVYPERLGDLVMKEVVPGSNVYLEGNLETKIFTDPVTGLVRHVREIAIRGNGRIVSLGGDGTTPGASG LKGVGYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18580			Nucleic acid-binding, OB-fold-...		Lus10038946 [exp]	0	1
AT4G36050			endonuclease/exonuclease/phosp...		Lus10028455 [exp]	8.5	0.7231
AT5G43822			Pentatricopeptide repeat (PPR)...		Lus10030735 [exp]	16.2	0.6808
AT1G28760			Uncharacterized conserved prot...		Lus10034420 [exp]	16.3	0.6957
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Lus10014490 [exp]	18.8	0.6510
AT4G33460		ABCI10, ATNAP13...	embryo defective 2751, ATP-bin...		Lus10002094 [exp]	20.4	0.6131
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10034085 [exp]	21.3	0.5373
AT4G15820			unknown protein		Lus10034169 [exp]	23.4	0.6637
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10014026 [exp]	28.6	0.6335
AT1G07615			GTP-binding protein Obg/CgtA (...		Lus10040813 [exp]	32.2	0.6056
AT3G02330			Pentatricopeptide repeat (PPR)...		Lus10032091 [exp]	43.5	0.6313

Compare expression of checked genes

Lus10038946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.