Plant FIBer expression Database

Lus10038947 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G48950 454 / 2e-153 C3HC zinc finger-like (.1)
AT1G17210 187 / 4e-50 ATILP1 ARABIDOPSIS IAP-LIKE PROTEIN, IAP-like protein 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027238
[exp]
969 / 0 AT1G48950 489 / 8e-167 C3HC zinc finger-like (.1)
Lus10023288
[exp]
216 / 5e-60 AT1G17210 848 / 0.0 ARABIDOPSIS IAP-LIKE PROTEIN, IAP-like protein 1 (.1)
Lus10038518
[exp]
216 / 6e-60 AT1G17210 855 / 0.0 ARABIDOPSIS IAP-LIKE PROTEIN, IAP-like protein 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G052400
[exp]
465 / 3e-155 AT1G48950 409 / 2e-133 C3HC zinc finger-like (.1)
Potri.011G081200
[exp]
229 / 1e-64 AT1G17210 905 / 0.0 ARABIDOPSIS IAP-LIKE PROTEIN, IAP-like protein 1 (.1)
Potri.012G058550
[exp]
188 / 4e-53 AT1G48950 159 / 1e-42 C3HC zinc finger-like (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0417 BIR-like PF07967 zf-C3HC C3HC zinc finger-like
Representative CDS sequence
>Lus10038947 pacid=23150355 polypeptide=Lus10038947 locus=Lus10038947.g ID=Lus10038947.BGIv1.0 annot-version=v1.0
ATGGTAGGGGAATCTGAGAAGAAGTTCCACTCCATCATGGACACGATCTTAAGTCCTCCCTCTAAGTCCTCTAGTTTGTCTGCGGGAGAGTCGTCGAGAG
GGAAAAAGCGGCCGAATCCTGATTCCGCGTTAGCCTTGGTGGAGCCGAGATCGAAGACGGCGGATATATTTGATGCGTCCCGTCGTTCTACGGTAGCTCA
GAGTGATGCTCATTTGTGTAGACCGTGGAGTAGAGGCGACCTCATGAGGAGGTTGGCTACTTTCAAGTCTATGACGTGGTTCGCCAAGCCAAAGGTTGTA
AGTGCTGTAAATTGTGCAAGGAGGGGATGGAACAACGTGGATACAGATATCATAGCCTGTGAAACATGTGGTGTACGTCTCCTCTTTTCAACTCCATCAT
CCTGGGCTCAGCAACAAGGCAACTTGAAGCTGGATAACGGACACAAGTTAGTGTGTCCGTGGGTTGACAATGCGTGTGATGAGAGATTGGCAGAGTTTCC
TCCCACCCCATTTCCGATTCTAGTCGATAAATTCAAAGAACGTTCCTTGAAGCTTCTACATCTTCTGGCACTTCCTGTCATTTCATCTTCGGCCATTGAA
CACATGAGAAGAAGCCCACTCCTGGAAGAATTTCTTAGCCAGTCTACTACACTCAACCTCGGAAATGGATCTGTCAGCATGTCGCAATTGGAGCTTGTTG
GAAATGAGAATGAAGCTGACGATGCAAAGTTGTATTACCAGGCACAAAAGTTAATAAGTCTTTGTGGTTGGGTACCACGGTCACTACCTTATGTTGTTGA
TTGCATAGAGAACCCAACGGGCTCTGAAAGAGAGAAGTCACCCCTTCCTGAATCTACTAGACAGAGTTCAAGCATCAACGTTCATTCAGCTGCTACCAAA
GAAAGAGTAGAGGTCACTGAAGAATCCGGCAACCATGTTGGCTCCCATGTCGATCCTAACTCAGTAGTTTTGGATTGCGGACTCTGTGGAGCTAGTGTAG
GATTATGGACATATTCTACAGTCCCTAGGCCTATAGAGTTGTTTAGGGTGTCTGGACTTGCAGAACTGACAAGTAACCCGAGTGCTGGGCAAGAAACTGA
AGACCAGGCTAACAAAGGTGGAGCAGTAACTTCTTCCTCGAACAGTCTTCTGTCTCCTCCCTCCAGTATGAAGTTTACTATTGCTGGCGGTCCTCCTCCT
ACAAAACAGAACTTCAAAGCCACAATTTCGGTTCCGATTATAGGGAAGAATATGAGGGCCAGACTTTCAGATGACATTGATTTCGGAGACCGTCCAAATG
CAAGTGAGGCAGATTCTGGATCTCAGTCTGATAAAACATTGAGCAAAGCAATTGACCAGGAACTGCAGGTTAGTGTATTAAACAACAACCAATCGTCGGG
GCTCGATGCTGAAGGTTGTGAGGCTCCTCAACTGTTGTTGGAAGCAAGCACAAGTGTTGCCCCAAATACAGAGTTTAACCATACTGACACTGAAGGTGTC
ATTGAAGAAGGATCACAGAAACAAGGAGAAGTTGTGCCCTATGGTACCAGGAATGATGTGAAGAAACTCTCATCAGGCGGGACAACCATGGATTTCGACC
CTATTCGACAGCACAGGCATTTCTGTCCGTGGATTATATCGAGCAACAGTGGCACACCAGGCTGGCAGCAGACGTTGACCGCTCTGCAACGCCAGGACGA
TCCGTCTAGTTCCTCTCCGAAAACTCCTTGTTCAACTTCTTCCATCTTCAAGGTCGGGGATCCCATAACATCAGTTCAGAAGCTTTTCGGATCACCGTCG
GCCAAACGACCGAAGGTCACGCCTAGATCAAGCTGA
AA sequence
>Lus10038947 pacid=23150355 polypeptide=Lus10038947 locus=Lus10038947.g ID=Lus10038947.BGIv1.0 annot-version=v1.0
MVGESEKKFHSIMDTILSPPSKSSSLSAGESSRGKKRPNPDSALALVEPRSKTADIFDASRRSTVAQSDAHLCRPWSRGDLMRRLATFKSMTWFAKPKVV
SAVNCARRGWNNVDTDIIACETCGVRLLFSTPSSWAQQQGNLKLDNGHKLVCPWVDNACDERLAEFPPTPFPILVDKFKERSLKLLHLLALPVISSSAIE
HMRRSPLLEEFLSQSTTLNLGNGSVSMSQLELVGNENEADDAKLYYQAQKLISLCGWVPRSLPYVVDCIENPTGSEREKSPLPESTRQSSSINVHSAATK
ERVEVTEESGNHVGSHVDPNSVVLDCGLCGASVGLWTYSTVPRPIELFRVSGLAELTSNPSAGQETEDQANKGGAVTSSSNSLLSPPSSMKFTIAGGPPP
TKQNFKATISVPIIGKNMRARLSDDIDFGDRPNASEADSGSQSDKTLSKAIDQELQVSVLNNNQSSGLDAEGCEAPQLLLEASTSVAPNTEFNHTDTEGV
IEEGSQKQGEVVPYGTRNDVKKLSSGGTTMDFDPIRQHRHFCPWIISSNSGTPGWQQTLTALQRQDDPSSSSPKTPCSTSSIFKVGDPITSVQKLFGSPS
AKRPKVTPRSS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G48950 C3HC zinc finger-like (.1) Lus10038947
[exp]
0 1
AT1G04210 Leucine-rich repeat protein ki... Lus10021899
[exp]
1.4 0.9557
AT1G04210 Leucine-rich repeat protein ki... Lus10041180
[exp]
2.0 0.9378
AT2G41500 EMB2776, LIS LACHESIS, WD-40 repeat family ... Lus10004167
[exp]
2.8 0.9009
AT2G30470 B3 HSI2, VAL1 VP1/ABI3-LIKE 1, high-level ex... Lus10011245
[exp]
4.2 0.9159
AT1G05460 SDE3 SILENCING DEFECTIVE, P-loop co... Lus10010577
[exp]
5.0 0.9086
AT3G54190 Transducin/WD40 repeat-like su... Lus10035613
[exp]
8.1 0.8566
AT3G20280 RING/FYVE/PHD zinc finger supe... Lus10013301
[exp]
8.5 0.8857
AT5G53180 ATPTB2 polypyrimidine tract-binding p... Lus10014931
[exp]
13.2 0.8791
AT5G11530 EMF1 embryonic flower 1 (EMF1) (.1) Lus10009490
[exp]
14.9 0.9067
AT3G22430 unknown protein Lus10041205
[exp]
15.1 0.8737

Lus10038947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.