Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68780 350 / 2e-117 RNI-like superfamily protein (.1) AT1G13230 349 / 4e-117 Leucine-rich repeat (LRR) family protein (.1) AT3G25670 347 / 1e-115 Leucine-rich repeat (LRR) family protein (.1) AT4G28560 156 / 6e-43 RIC7 ROP-interactive CRIB motif-containing protein 7 (.1) AT2G42800 152 / 5e-41 AtRLP29 receptor like protein 29 (.1) AT1G80080 132 / 1e-33 AtRLP17, TMM TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) AT4G08850 115 / 3e-27 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT5G63930 112 / 3e-26 Leucine-rich repeat protein kinase family protein (.1) AT1G71400 110 / 1e-25 AtRLP12 receptor like protein 12 (.1) AT1G35710 110 / 1e-25 Protein kinase family protein with leucine-rich repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027239 [exp] 649 / 0 AT3G25670 402 / 6e-138 Leucine-rich repeat (LRR) family protein (.1) Lus10034261 [exp] 382 / 3e-130 AT1G13230 460 / 6e-161 Leucine-rich repeat (LRR) family protein (.1) Lus10034384 [exp] 377 / 4e-128 AT1G13230 455 / 5e-159 Leucine-rich repeat (LRR) family protein (.1) Lus10010946 [exp] 145 / 1e-38 AT2G42800 459 / 2e-159 receptor like protein 29 (.1) Lus10042458 [exp] 143 / 2e-38 AT1G80080 467 / 3e-163 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Lus10003624 [exp] 141 / 6e-37 AT4G28560 441 / 2e-152 ROP-interactive CRIB motif-containing protein 7 (.1) Lus10026208 [exp] 139 / 2e-36 AT1G80080 500 / 2e-175 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Lus10031383 [exp] 139 / 8e-36 AT2G42800 446 / 1e-152 receptor like protein 29 (.1) Lus10008242 [exp] 126 / 6e-32 AT4G28560 395 / 8e-135 ROP-interactive CRIB motif-containing protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G114700 [exp] 380 / 9e-129 AT1G68780 387 / 2e-131 RNI-like superfamily protein (.1) Potri.001G202100 [exp] 150 / 3e-40 AT1G80080 597 / 0.0 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Potri.008G211800 [exp] 134 / 1e-34 AT2G42800 474 / 7e-166 receptor like protein 29 (.1) Potri.005G227600 [exp] 132 / 9e-34 AT4G28560 444 / 2e-153 ROP-interactive CRIB motif-containing protein 7 (.1) Potri.003G184100 [exp] 113 / 9e-27 AT2G24130 710 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G001000 [exp] 111 / 3e-26 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.002G008450 [exp] 111 / 3e-26 AT4G08850 462 / 9e-150 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G008100 [exp] 110 / 8e-26 AT4G08850 565 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G088900 [exp] 109 / 2e-25 AT4G20140 700 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.006G099100 [exp] 109 / 2e-25 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10038948 pacid=23150528 polypeptide=Lus10038948 locus=Lus10038948.g ID=Lus10038948.BGIv1.0 annot-version=v1.0 ATGGAAGGGCGTTCCAGAAAGAACTTGTGCTGCTTGCTACTACTACTGTGGCAGCTTCTCTTGGTTGCGAACCTTCATCCATGTCGAGGAACAGAGGAGG AGGTAGTTTCAGCTCCAATGGTGAAAGAAGAGAAAGAAGCCCTCTTTGCAGCCATTCAAGGGTTTGTAGGGAAATGGTGGAATGGGTCTGATCTTTACCC TGACCCTTGTGGTTGGACTCCAATCCAGGGAGTTTCCTGTGACGTCTTTAATGGCTACTGGTACACAACAAGCTTACACATTGGACCAGTAATGGAGAAC TCTCTCCAATGCAGCTCAAATCCCAGATTCACAATCCACCTCTTTCAACTCACCCATCTCCGTACTTTGTCCATCTTCAACTGCTTTCTCCATTCCCACA TCAGAATCCCCAGTACCAACTGGGCAATCTTTTCCAACACCTTGGAAACGTTGGAGTTCCGATCGAATCCGGCCCTAATCGGCTCGATCCCTTCCTCTCT ATCCACCCTCAAGAGCCTCAAGTCCCTAATCCTGATAGAGAACGGATTACAAGGCAACATACCTTCCGCGATTGGGAAATTAGTCAAGCTGAAGCAGCTG GTACTTTCGTCGAACAGGTTATCTGCACAAATTCCTGAAACTCTCGGAGGTTTACCGAACCTCCTGATTCTCGACGCTAGCAGGAATTCGATTGTGGGTT CGATCCCTAATACGTTCGGATCGTTTACTTCGCTTCTGAAGCTCGATCTGAGCTACAATCAGATCGAATCAAACCTGCCGCGGGAAATCGGAAACCTGAA GAATCTCACTCTACTCGACCTGAGAAACAACAAGCTATCAGGCGGATTAGTACCTGAATTGGAATCGATGGTTTCGTTGAAGGAGCTTTCCCTCTCGGGA AATCCAATCATCGGCGGGGAAATGACAGTAATTCAGTGGCGGAGAATGCAGAGCCTGGAGGTTTTGGATCTTTCTAATACAGGTTTGAACGGAGACGTCC CGGCGACGGTGGCGGAAATGAAGCGGCTGAGGTTTTTAGGGCTGAGCGATAACTTTCTGTCCGGGAAAGTGTCGCCGAAGCTTGTGGAGATGGAGAATCT GGGAGCAATGTACCTTCAGATGAATAACTTCAGTGGAGTTCTTGAGTTTCCGATGAGGTTTTACGGGAGGATGGGGAGGAGATTTGGGGCTTGGGGTAAT CGGAATCTTTGCTATTTGGAAGAATCGATGTCGCCGGAGGACGAAGCGGCGGTGGCGGGAAGGAATAGTATTCGCCGCCGGCCACCTTATGGAGTTAAAC GGTGCCGTTTGTGA
AA sequence Show only first row Show all	>Lus10038948 pacid=23150528 polypeptide=Lus10038948 locus=Lus10038948.g ID=Lus10038948.BGIv1.0 annot-version=v1.0 MEGRSRKNLCCLLLLLWQLLLVANLHPCRGTEEEVVSAPMVKEEKEALFAAIQGFVGKWWNGSDLYPDPCGWTPIQGVSCDVFNGYWYTTSLHIGPVMEN SLQCSSNPRFTIHLFQLTHLRTLSIFNCFLHSHIRIPSTNWAIFSNTLETLEFRSNPALIGSIPSSLSTLKSLKSLILIENGLQGNIPSAIGKLVKLKQL VLSSNRLSAQIPETLGGLPNLLILDASRNSIVGSIPNTFGSFTSLLKLDLSYNQIESNLPREIGNLKNLTLLDLRNNKLSGGLVPELESMVSLKELSLSG NPIIGGEMTVIQWRRMQSLEVLDLSNTGLNGDVPATVAEMKRLRFLGLSDNFLSGKVSPKLVEMENLGAMYLQMNNFSGVLEFPMRFYGRMGRRFGAWGN RNLCYLEESMSPEDEAAVAGRNSIRRRPPYGVKRCRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68780			RNI-like superfamily protein (...		Lus10038948 [exp]	0	1
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10011472 [exp]	4.2	0.8785
					Lus10010102 [exp]	4.6	0.8696
AT1G30670	bHLH	bHLH052	basic helix-loop-helix (bHLH) ...		Lus10005451 [exp]	6.5	0.8752
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10021319 [exp]	11.2	0.8467
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10036664 [exp]	14.4	0.8096
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Lus10007138 [exp]	14.7	0.8296
AT4G28560		RIC7	ROP-interactive CRIB motif-con...		Lus10003624 [exp]	14.7	0.7965
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10014316 [exp]	14.9	0.8431
AT3G49950	GRAS		GRAS family transcription fact...		Lus10018498 [exp]	15.1	0.8560
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10001066 [exp]	15.5	0.8205

Compare expression of checked genes

Lus10038948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.