Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62200 89 / 2e-20 Putative endonuclease or glycosyl hydrolase (.1) AT5G61180 85 / 2e-19 Putative endonuclease or glycosyl hydrolase (.1) AT3G62210 84 / 3e-19 EDA32 embryo sac development arrest 32, Putative endonuclease or glycosyl hydrolase (.1) AT5G61190 82 / 9e-18 C2H2ZnF putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain (.1) AT5G64710 69 / 3e-13 Putative endonuclease or glycosyl hydrolase (.1.2) AT3G60940 63 / 9e-12 Putative endonuclease or glycosyl hydrolase (.1) AT3G62850 62 / 4e-11 C2H2ZnF zinc finger protein-related (.1) AT5G09840 59 / 4e-10 Putative endonuclease or glycosyl hydrolase (.1) AT3G61028 54 / 2e-08 Putative endonuclease or glycosyl hydrolase (.1.2) AT3G62050 52 / 2e-08 Putative endonuclease or glycosyl hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009982 [exp] 100 / 5e-24 AT3G62200 429 / 9e-142 Putative endonuclease or glycosyl hydrolase (.1) Lus10033511 [exp] 70 / 1e-13 AT5G09840 561 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Lus10020866 [exp] 64 / 8e-12 AT5G09840 565 / 0.0 Putative endonuclease or glycosyl hydrolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G003200 [exp] 89 / 3e-20 AT3G62200 258 / 8e-76 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003301 [exp] 86 / 3e-19 AT3G62200 276 / 2e-85 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003000 [exp] 83 / 2e-18 AT3G62210 250 / 9e-78 embryo sac development arrest 32, Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003100 [exp] 79 / 3e-17 AT3G62200 280 / 1e-87 Putative endonuclease or glycosyl hydrolase (.1) Potri.005G003800 [exp] 77 / 3e-16 AT3G62200 465 / 2e-156 Putative endonuclease or glycosyl hydrolase (.1) Potri.001G307700 [exp] 67 / 8e-13 AT5G09840 588 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Potri.019G004000 [exp] 62 / 3e-11 AT5G09840 406 / 2e-126 Putative endonuclease or glycosyl hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF01936 [flax] [poplar] NYN NYN domain
Representative CDS sequence Show only first row Show all	>Lus10038949 pacid=23150344 polypeptide=Lus10038949 locus=Lus10038949.g ID=Lus10038949.BGIv1.0 annot-version=v1.0 ATGAATTTGTCCAACCGAGTTGAACCCAACCCGACTCGTGATTCGGTAGTGACCCGATTGGACCATGATCGAATTAACCAACATTCCGAATATCCATCTA TCGTGATTGACTGGCCCACCCTGATTTACGTTACAGCGGAATTGGCTTTAACAAATCAAGCATCCTTTTGCGCCATTCTTCTCTTTTTCGAGCTTCATCA ATGTCTTCAGCGTCAAATCCTGATGTCCTCGAAATTCTTTAGCCAGATGGTCGGAAACGACGACGACAGCAGGATCAAGGCGGAGGCGAAGTACGGAAAG GCGAAGACTTCGGTCTGGTGGGACTTGGAAAACTGTGGAGTGCCCAAGGGGAACGACGGCCTCGACATCTCTCGGAAAATCAAGGTTTCTCTTGAGAGTT GCAATTACGATGGCCCTGTGTCCATCTTTGCTTACGGCGATGCCGATGAGATGTCGCCGTCCGTCGTAGATGCTCTCTGGAACACCAGCATCTCACTCAG GCATGTCCCCACCGGTTCATTCTCTCACCCTTCCTGCAACTCCAAATTTCTGATTGCGGGTATCCGTTTATATAGGGTGACAGGGCGGGACGGATTGGAT GATATCTACAGGAGTCCCGACGGGTACCAGCCACTTATTATTTAG
AA sequence Show only first row Show all	>Lus10038949 pacid=23150344 polypeptide=Lus10038949 locus=Lus10038949.g ID=Lus10038949.BGIv1.0 annot-version=v1.0 MNLSNRVEPNPTRDSVVTRLDHDRINQHSEYPSIVIDWPTLIYVTAELALTNQASFCAILLFFELHQCLQRQILMSSKFFSQMVGNDDDSRIKAEAKYGK AKTSVWWDLENCGVPKGNDGLDISRKIKVSLESCNYDGPVSIFAYGDADEMSPSVVDALWNTSISLRHVPTGSFSHPSCNSKFLIAGIRLYRVTGRDGLD DIYRSPDGYQPLII

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62200			Putative endonuclease or glyco...		Lus10038949 [exp]	0	1
AT5G49170			unknown protein		Lus10022872 [exp]	15.9	0.7347
AT1G15170			MATE efflux family protein (.1...		Lus10018135 [exp]	18.6	0.7181
					Lus10025229 [exp]	20.3	0.7288
AT4G39380			unknown protein		Lus10020841 [exp]	25.6	0.7085
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10033044 [exp]	28.5	0.6770
					Lus10010925 [exp]	29.7	0.6992
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10017771 [exp]	29.7	0.6925
AT5G03500			Mediator complex, subunit Med7...		Lus10029326 [exp]	29.8	0.7046
AT5G10630			Translation elongation factor ...		Lus10026953 [exp]	30.5	0.7074
AT1G67590			Remorin family protein (.1.2)		Lus10036996 [exp]	34.2	0.7049

Compare expression of checked genes

Lus10038949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.