Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18600 735 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G65900 652 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT5G54910 333 / 3e-105 DEA(D/H)-box RNA helicase family protein (.1) AT2G40700 291 / 3e-90 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G71370 282 / 2e-87 DEA(D/H)-box RNA helicase family protein (.1) AT5G05450 273 / 9e-84 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G08620 243 / 8e-73 ATRH25, STRS2 STRESS RESPONSE SUPPRESSOR 2, RNA HELICASE 25, DEA(D/H)-box RNA helicase family protein (.1) AT5G08610 243 / 2e-70 PDE340 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G60990 234 / 3e-70 DEA(D/H)-box RNA helicase family protein (.1) AT5G63630 239 / 4e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027240 [exp] 1016 / 0 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009616 [exp] 906 / 0 AT3G18600 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008989 [exp] 632 / 0 AT3G18600 508 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012172 [exp] 342 / 4e-107 AT5G54910 865 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10007574 [exp] 335 / 1e-104 AT5G54910 862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10030523 [exp] 280 / 6e-86 AT2G40700 799 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012874 [exp] 275 / 4e-84 AT2G40700 793 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009838 [exp] 264 / 6e-80 AT5G05450 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10004017 [exp] 251 / 3e-75 AT5G63630 797 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G045300 [exp] 914 / 0 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G250700 [exp] 910 / 0 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G423300 [exp] 333 / 8e-105 AT5G54910 858 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G059100 [exp] 293 / 2e-91 AT2G40700 814 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G073100 [exp] 276 / 1e-84 AT5G05450 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G068800 [exp] 243 / 1e-73 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 237 / 9e-72 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.014G097700 [exp] 240 / 8e-70 AT5G63630 768 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G169800 [exp] 237 / 1e-68 AT5G63630 810 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G013900 [exp] 218 / 2e-64 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10038950 pacid=23150248 polypeptide=Lus10038950 locus=Lus10038950.g ID=Lus10038950.BGIv1.0 annot-version=v1.0 ATGACCGTACTAGCAGAGAACAAGCAGCCGCACGAATCGCCGTCAGATGAGCTGAAGAAGAAGAGGAAACGAAAGCGTAGCAGAGGAAACAAAGGTGCTG CGGAGGCTACTGATGAAGCTCAAGAGGGGGCAAAACAGGACAGTGGAGATGAGGAGGAAGAGAAGGAAGCCGTGAGTGAGAAGAAGGAAAAGAAGAGTAA GAATAAGAAGAAGCAGAAGAAGATTGAAGCGAAGGGAGAGGATGCTGGCGATGGAGAGAAGGGGAAGGGAGAAGGAGGAGAAGAAGATGGGAAGACGAAG GAAAAGAAAGTTAAGAGTGGGGGAGGGATTATGAGCACCGAGTCGTTTGAATCTATTGGATTGTCGGAGCCTACTCGGATGGCGATTCAGGATATTGGGT TCCAGTATTTGACTCAGATTCAAGCTGGAGCAATTCCACCGCTGCTAATGGGAAAGGATGTTCTTGGTGCTGCGAGGACTGGTTCTGGGAAGACTCTTGC CTTCCTTATACCAGCTGTGGAGTTGCTGCATAGCATTAGTTTTGCTCCTCGTAATGGGACAGGAGTGGTCGTCATTTGCCCTACTAGAGAACTTGCCATA CAGACACATCAAGTGGCAGAAGACCTCCTCAAGCATCATTCTCAAACTCTAGGATTGGTTATTGGTGGCGCGGCAAGGAAAGGAGAAGCGGAACGACTTG TGAGGGGGGTAAACTTGTTGGTTGCAACTCCTGGACGGCTTCTAGATCATCTCCAAAATACTAAAGGTTTCATCTATAAGAACTTAAAGTGCCTTATTAT TGACGAGGCAGACAGGATTTTGGAAGCAAACTTTGAGGAAGAAATGAAGCAAATTATCAAGATTTTGCCTAAGACTAGACAGACTGCCTTATTCTCAGCT ACCCAGACTAAAAAGGTGGAGGACCTTGCTCGGTTATCGTTTCAGACGGGTCCTATATACATTGATGTCGACGATGGGAGAAATAAGGTTACAAATGAAG GTCTGCAGCAAGGCTACACAGTGATTCCAAGTGCCAAGAGATTTATTCTTCTTTACTCCTTCTTGAAGAGGAATCTATCAAAGAAAGTGATGGTTTTCTT CTCCTCGTGTCATTCTGTCAAGTTCCACTCGGAACTTCTTAAATACATCCAAATAGAATGCTTTGACATTCATGGGAAACAAAAGCAACAGAAGCGAACC TCAACCTTCTTCGACTTCTGCAAAGCCGACAAGGGGATCTTGCTGTGCACCGATGTTGCTGCTCGTGGACTTGATATACCCGCTGTGGATTGGATTGTGC AGTATGATCCTCCTGATGAGCCCAAGGAGTACATACATAGGGTTGGCCGAACAGCACGTGGAGAAGGCGCAAAAGGAAATGCGTTGATGTTCCTTATTCC AGAAGAACTGCAATTTCTTCGCTATCTGAAGGCAGCAAAGGTTCCCGTTAAAGAGTATGAATTTGATGAGAAGAAGCTAGCAAATGTTCAGAGTCACCTG GAAAAGTTGGTGGCCAACAATTATTATTTGAACAAGTCGGCAAAGGATGCTTACCGGTCTTACATATTGGCATACAACTCTCACTCGATGAAGGATATCT TCAACGTCCACCGCCTCGATCTACAGGCGGTAGCTGCTTCATTCTGCTTCGCTGGGCCGCCCAAGGTGAACCTGAACATTGACAGCAGTGCTTCCAAGTT TCGAAAGACGAACAAGAAAGGAAGCTTCAACGAGAGCAATCCTTACGGCCGAAGATCGAACGATGAAGGTGATACACGGCAATTCGTGAGATACTAG
AA sequence Show only first row Show all	>Lus10038950 pacid=23150248 polypeptide=Lus10038950 locus=Lus10038950.g ID=Lus10038950.BGIv1.0 annot-version=v1.0 MTVLAENKQPHESPSDELKKKRKRKRSRGNKGAAEATDEAQEGAKQDSGDEEEEKEAVSEKKEKKSKNKKKQKKIEAKGEDAGDGEKGKGEGGEEDGKTK EKKVKSGGGIMSTESFESIGLSEPTRMAIQDIGFQYLTQIQAGAIPPLLMGKDVLGAARTGSGKTLAFLIPAVELLHSISFAPRNGTGVVVICPTRELAI QTHQVAEDLLKHHSQTLGLVIGGAARKGEAERLVRGVNLLVATPGRLLDHLQNTKGFIYKNLKCLIIDEADRILEANFEEEMKQIIKILPKTRQTALFSA TQTKKVEDLARLSFQTGPIYIDVDDGRNKVTNEGLQQGYTVIPSAKRFILLYSFLKRNLSKKVMVFFSSCHSVKFHSELLKYIQIECFDIHGKQKQQKRT STFFDFCKADKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGAKGNALMFLIPEELQFLRYLKAAKVPVKEYEFDEKKLANVQSHL EKLVANNYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFAGPPKVNLNIDSSASKFRKTNKKGSFNESNPYGRRSNDEGDTRQFVRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18600			P-loop containing nucleoside t...		Lus10038950 [exp]	0	1
AT3G18600			P-loop containing nucleoside t...		Lus10027240 [exp]	1.7	0.9280
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10015029 [exp]	2.2	0.8947
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10020542 [exp]	3.5	0.9033
AT3G18580			Nucleic acid-binding, OB-fold-...		Lus10027237 [exp]	3.9	0.9002
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Lus10031012 [exp]	4.6	0.8881
AT2G37510			RNA-binding (RRM/RBD/RNP motif...		Lus10023758 [exp]	8.5	0.8503
AT5G09510			Ribosomal protein S19 family p...		Lus10018777 [exp]	8.5	0.8733
AT3G48250		BIR6	Buthionine sulfoximine-insensi...		Lus10019474 [exp]	10.2	0.8695
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10028574 [exp]	10.6	0.8962
AT3G01790			Ribosomal protein L13 family p...		Lus10014597 [exp]	11.8	0.8587

Compare expression of checked genes

Lus10038950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.