Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23100 151 / 2e-46 Protein of unknown function, DUF617 (.1) AT3G25640 138 / 1e-41 Protein of unknown function, DUF617 (.1) AT2G41660 122 / 7e-35 MIZ1 mizu-kussei 1, Protein of unknown function, DUF617 (.1) AT2G37880 104 / 2e-28 Protein of unknown function, DUF617 (.1) AT5G06990 104 / 3e-28 Protein of unknown function, DUF617 (.1) AT4G39610 100 / 1e-26 Protein of unknown function, DUF617 (.1) AT5G42680 96 / 3e-25 Protein of unknown function, DUF617 (.1.2) AT2G21990 96 / 4e-25 Protein of unknown function, DUF617 (.1) AT1G21050 87 / 5e-22 Protein of unknown function, DUF617 (.1) AT1G76610 78 / 2e-18 Protein of unknown function, DUF617 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027241 [exp] 223 / 1e-74 AT5G23100 270 / 1e-90 Protein of unknown function, DUF617 (.1) Lus10000863 [exp] 167 / 8e-53 AT5G23100 276 / 3e-93 Protein of unknown function, DUF617 (.1) Lus10009615 [exp] 154 / 2e-47 AT5G23100 258 / 4e-86 Protein of unknown function, DUF617 (.1) Lus10034386 [exp] 132 / 7e-39 AT3G25640 268 / 3e-90 Protein of unknown function, DUF617 (.1) Lus10019166 [exp] 130 / 3e-38 AT3G25640 258 / 2e-86 Protein of unknown function, DUF617 (.1) Lus10031059 [exp] 130 / 5e-38 AT2G41660 258 / 4e-85 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10035443 [exp] 127 / 1e-36 AT2G41660 248 / 4e-81 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10036630 [exp] 108 / 2e-29 AT4G39610 308 / 5e-105 Protein of unknown function, DUF617 (.1) Lus10035847 [exp] 108 / 3e-29 AT2G21990 306 / 1e-104 Protein of unknown function, DUF617 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G053000 [exp] 160 / 3e-50 AT5G23100 293 / 3e-100 Protein of unknown function, DUF617 (.1) Potri.012G058300 [exp] 159 / 5e-50 AT5G23100 261 / 7e-88 Protein of unknown function, DUF617 (.1) Potri.010G131600 [exp] 141 / 1e-42 AT3G25640 249 / 1e-82 Protein of unknown function, DUF617 (.1) Potri.008G114500 [exp] 140 / 3e-42 AT3G25640 228 / 2e-74 Protein of unknown function, DUF617 (.1) Potri.006G048800 [exp] 125 / 3e-36 AT2G41660 241 / 3e-79 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.016G056800 [exp] 124 / 3e-36 AT2G41660 202 / 6e-64 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.001G031900 [exp] 108 / 5e-30 AT5G06990 275 / 6e-93 Protein of unknown function, DUF617 (.1) Potri.002G128800 [exp] 106 / 2e-29 AT5G42680 269 / 2e-91 Protein of unknown function, DUF617 (.1.2) Potri.003G193700 [exp] 106 / 4e-29 AT5G06990 328 / 6e-114 Protein of unknown function, DUF617 (.1) Potri.014G035000 [exp] 104 / 1e-28 AT5G42680 286 / 2e-98 Protein of unknown function, DUF617 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04759 [flax] [poplar] DUF617 Protein of unknown function, DUF617
Representative CDS sequence Show only first row Show all	>Lus10038951 pacid=23150600 polypeptide=Lus10038951 locus=Lus10038951.g ID=Lus10038951.BGIv1.0 annot-version=v1.0 ATGGCGTCCGGGTTGGTCAGGATCGCTCTGGAATGCGACGGCGGCAAGAAACAGAGCAGTAATAATAAAAACAGAGCATCTTCTGCATCTTCAAGTAGGT TGCTGGAGGAGACGAATTGGAGGGCGTACTGCAACGGGAAGAAGTGCGGTATGGCAGCGAGGAAACTGGAGTGTGGTTCGAGGGAGATGAAGCTTCTGAA GAGCTTGGAAATGGTTTCCATGGGCGCCGGAGTTATGCCGAGCTACGGCGGCGAAGGAGGGAGGGAGGAGATTATGTACATGAGGGCGAAGTTTGAAAGA GTTGTTGGGTCAAGAGATTCGGAGGCTTTCTATATGATGAATCCTGATTGTAATGGTGCTCCTGAGCTTAGTATCTATCTTCTTAGAGTTTGA
AA sequence Show only first row Show all	>Lus10038951 pacid=23150600 polypeptide=Lus10038951 locus=Lus10038951.g ID=Lus10038951.BGIv1.0 annot-version=v1.0 MASGLVRIALECDGGKKQSSNNKNRASSASSSRLLEETNWRAYCNGKKCGMAARKLECGSREMKLLKSLEMVSMGAGVMPSYGGEGGREEIMYMRAKFER VVGSRDSEAFYMMNPDCNGAPELSIYLLRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23100			Protein of unknown function, D...		Lus10038951 [exp]	0	1
AT1G65870			Disease resistance-responsive ...		Lus10029306 [exp]	8.9	0.8240
AT1G61500			S-locus lectin protein kinase ...		Lus10024081 [exp]	14.6	0.8147
AT1G14190			Glucose-methanol-choline (GMC)...		Lus10032346 [exp]	27.7	0.8233
AT5G53190		SWEET3, AtSWEET...	Nodulin MtN3 family protein (....		Lus10014932 [exp]	28.4	0.7737
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10033172 [exp]	44.5	0.7519
AT4G14060			Polyketide cyclase/dehydrase a...		Lus10008932 [exp]	55.3	0.7939
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023184 [exp]	59.4	0.7637
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10030616 [exp]	61.2	0.7909
AT5G60660		PIP2F, PIP2;4	plasma membrane intrinsic prot...		Lus10015083 [exp]	64.9	0.7454
AT5G59540			2-oxoglutarate (2OG) and Fe(II...		Lus10000612 [exp]	67.5	0.7037

Compare expression of checked genes

Lus10038951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.