Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23090 214 / 3e-72 CCAAT NF-YB13 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4) AT5G08190 204 / 2e-68 CCAAT NF-YB12 "nuclear factor Y, subunit B12", nuclear factor Y, subunit B12 (.1.2) AT2G38880 76 / 1e-17 CCAAT ATNF-YB1, ATHAP3, HAP3A "nuclear factor Y, subunit B1", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3A, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, NUCLEAR FACTOR Y SUBUNIT B1, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, nuclear factor Y, subunit B1 (.1.2.3.4.5.6.7.8) AT2G37060 74 / 4e-17 CCAAT NF-YB8 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) AT3G53340 72 / 3e-16 CCAAT NF-YB10 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) AT5G47670 71 / 1e-15 CCAAT NF-YB6, L1L "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) AT4G14540 70 / 1e-15 CCAAT NF-YB3 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) AT5G47640 67 / 3e-14 CCAAT NF-YB2, HAP3b "nuclear factor Y, subunit B2", nuclear factor Y, subunit B2 (.1) AT1G21970 67 / 4e-14 CCAAT AtLEC1, NF-YB9, EMB212, LEC1 NUCLEAR FACTOR Y, SUBUNIT B9, LEAFY COTYLEDON 1, EMBRYO DEFECTIVE 212, Histone superfamily protein (.1) AT1G09030 63 / 4e-13 CCAAT NF-YB4 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027242 [exp] 257 / 2e-89 AT5G23090 267 / 3e-93 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4) Lus10009614 [exp] 242 / 8e-83 AT5G23090 269 / 2e-93 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4) Lus10000864 [exp] 207 / 2e-69 AT5G23090 231 / 9e-79 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4) Lus10003909 [exp] 76 / 3e-17 AT5G47670 221 / 1e-72 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Lus10001914 [exp] 75 / 6e-17 AT5G47670 218 / 2e-71 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Lus10015058 [exp] 73 / 2e-16 AT2G37060 238 / 4e-81 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10001177 [exp] 72 / 5e-16 AT4G14540 225 / 9e-76 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10023484 [exp] 71 / 5e-16 AT2G37060 211 / 9e-71 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10001751 [exp] 71 / 2e-15 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G052800 [exp] 229 / 3e-78 AT5G23090 250 / 1e-86 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4) Potri.012G058200 [exp] 220 / 8e-75 AT5G23090 239 / 5e-82 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4) Potri.016G005600 [exp] 78 / 3e-18 AT5G47670 216 / 6e-71 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Potri.008G044800 [exp] 76 / 1e-17 AT2G37060 245 / 3e-84 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.010G216600 [exp] 74 / 4e-17 AT2G37060 236 / 2e-80 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.006G005000 [exp] 73 / 2e-16 AT5G47670 216 / 7e-71 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Potri.016G085000 [exp] 72 / 3e-16 AT3G53340 247 / 1e-84 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) Potri.014G167800 [exp] 71 / 1e-15 AT4G14540 221 / 1e-74 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.016G006100 [exp] 70 / 3e-15 AT4G14540 212 / 8e-71 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.001G367500 [exp] 68 / 6e-15 AT4G14540 210 / 2e-70 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Lus10038952 pacid=23150502 polypeptide=Lus10038952 locus=Lus10038952.g ID=Lus10038952.BGIv1.0 annot-version=v1.0 ATGGACCCGATGGATATTGTTGGTAAATCTAAGGAAGACGCTTCGCTTCCTAAAGCAACTATGACCAAAATCATTAAAGAGATGTTGCCACCAGATGTTC GTGTTGCACGGGATACACAAGACCTTCTGATTGAATGTTGTGTAGAGTTCATAAATCTTATATCTTCGGAGTCGAACGAAGTATGTGGCAGAGAGGAGAA GCGAACCATCGCTCCCGAGCATGTTCTCAAGGCTTTGGAGGTTCTCGGCTTTGGAGAGTACATTGAGGAGGTTTATGCTGCTTACGAGCAGCACAAGCTC GAGACGATGGACACACTAAAAGGCGGGAAATGGACGGGAACAGAGATGACAGAGGAGCAAGCTGCGGCAGAGCAACAGAGAATGTTTGCAGAGGCTCGAG CAAGAATGAACGGTGGAGTCCCCGCACCGAAGCAACCGGAGGACGACAGAAGCTTAGAGAACTAA
AA sequence Show only first row Show all	>Lus10038952 pacid=23150502 polypeptide=Lus10038952 locus=Lus10038952.g ID=Lus10038952.BGIv1.0 annot-version=v1.0 MDPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLISSESNEVCGREEKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKL ETMDTLKGGKWTGTEMTEEQAAAEQQRMFAEARARMNGGVPAPKQPEDDRSLEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10038952 [exp]	0	1
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10027242 [exp]	1.0	0.9801
AT3G07580			unknown protein		Lus10016076 [exp]	1.4	0.9709
AT3G06190		ATBPM2	BTB-POZ and MATH domain 2 (.1....		Lus10041235 [exp]	4.2	0.9535
AT5G08560			transducin family protein / WD...		Lus10001045 [exp]	4.7	0.9563
AT4G08240			unknown protein		Lus10014834 [exp]	5.9	0.9484
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10014187 [exp]	6.7	0.9583
AT2G01100			unknown protein		Lus10015331 [exp]	7.3	0.9419
AT1G04970			lipid-binding serum glycoprote...		Lus10014625 [exp]	7.4	0.9605
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10008197 [exp]	8.1	0.9403
AT3G52220			unknown protein		Lus10038762 [exp]	8.2	0.9536

Compare expression of checked genes

Lus10038952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.