Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18530 86 / 5e-22 EF hand calcium-binding protein family (.1) AT3G25600 77 / 9e-19 Calcium-binding EF-hand family protein (.1) AT1G32250 45 / 2e-06 Calcium-binding EF-hand family protein (.1) AT4G14640 45 / 2e-06 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT3G22930 44 / 6e-06 CML11 calmodulin-like 11 (.1) AT3G03000 42 / 2e-05 EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027243 [exp] 127 / 3e-38 AT1G18530 208 / 5e-70 EF hand calcium-binding protein family (.1) Lus10017900 [exp] 90 / 2e-23 AT3G25600 252 / 4e-87 Calcium-binding EF-hand family protein (.1) Lus10039961 [exp] 59 / 2e-12 AT1G18530 67 / 1e-15 EF hand calcium-binding protein family (.1) Lus10039391 [exp] 44 / 4e-06 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10030986 [exp] 44 / 6e-06 AT1G32250 219 / 3e-74 Calcium-binding EF-hand family protein (.1) Lus10035383 [exp] 43 / 1e-05 AT1G32250 152 / 8e-48 Calcium-binding EF-hand family protein (.1) Lus10004610 [exp] 42 / 5e-05 AT3G03000 243 / 3e-83 EF hand calcium-binding protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G052600 [exp] 89 / 3e-23 AT1G18530 213 / 8e-72 EF hand calcium-binding protein family (.1) Potri.010G132800 [exp] 89 / 3e-23 AT3G25600 229 / 4e-78 Calcium-binding EF-hand family protein (.1) Potri.003G095700 [exp] 54 / 2e-09 AT3G03000 220 / 1e-74 EF hand calcium-binding protein family (.1) Potri.001G138000 [exp] 52 / 5e-09 AT3G03000 221 / 8e-75 EF hand calcium-binding protein family (.1) Potri.010G080900 [exp] 42 / 1e-05 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.008G159300 [exp] 42 / 3e-05 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.005G215700 [exp] 39 / 0.0003 AT3G22930 200 / 8e-67 calmodulin-like 11 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038953 pacid=23150358 polypeptide=Lus10038953 locus=Lus10038953.g ID=Lus10038953.BGIv1.0 annot-version=v1.0 ATGGGCGCCGTGACGATGACGACGCTACGGATGAGCCAGCTCCGCGACATATTTGATAGGTTTGACATGGACTCGGACGGGAGTCTGACAGTGTTAGAGC TGGCGGCGTTGCTCCGGTCGCTAGGGTTGTCGGCCTCCGGCGATGAGATCCACGACCTCCTGACGAACATGGACTCAAACGGGAACGGACTCGTCGAATT CGAGGAGCTGGTGGACGCGATCTCCAACCAGATCGACGAGCAGACGCTAGTGAACCAGGAGCAGCTGCTGGAGATCTTCCAGCTGTTCGACCGGGGACGG GAACGGTGTGATAACGAAGGTGGAGCTCGCCGGCGGCTTGGCGAAGATGGGGCAGCCGCTGACGTGGAGGGAGCTAACGGAGATGATGATACAAGCGGAT ACCAACGGCGACGGCGTGATTAG
AA sequence Show only first row Show all	>Lus10038953 pacid=23150358 polypeptide=Lus10038953 locus=Lus10038953.g ID=Lus10038953.BGIv1.0 annot-version=v1.0 MGAVTMTTLRMSQLRDIFDRFDMDSDGSLTVLELAALLRSLGLSASGDEIHDLLTNMDSNGNGLVEFEELVDAISNQIDEQTLVNQEQLLEIFQLFDRGR ERCDNEGGARRRLGEDGAAADVEGANGDDDTSGYQRRRRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18530			EF hand calcium-binding protei...		Lus10038953 [exp]	0	1
					Lus10022179 [exp]	2.4	0.6827
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10000381 [exp]	4.1	0.7239
AT5G61000		ATRPA70D	Replication factor-A protein 1...		Lus10003025 [exp]	12.7	0.7031
AT2G44760			Domain of unknown function (DU...		Lus10020744 [exp]	16.4	0.6281
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Lus10016287 [exp]	16.9	0.6601
AT3G25440		LOH1	LAG One Homologue 1, RNA-bindi...		Lus10009566 [exp]	21.9	0.5809
AT3G59650			mitochondrial ribosomal protei...		Lus10022178 [exp]	27.0	0.6464
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10024623 [exp]	31.0	0.5747
AT1G76810			eukaryotic translation initiat...		Lus10023474 [exp]	32.2	0.6288
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10000177 [exp]	34.6	0.5422

Compare expression of checked genes

Lus10038953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.