Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18170 163 / 6e-50 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G73655 152 / 5e-46 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G26555 49 / 3e-07 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G19830 49 / 6e-07 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G13410 45 / 2e-05 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G10060 40 / 0.0006 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027246 [exp] 316 / 1e-110 AT1G18170 187 / 2e-59 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10031342 [exp] 129 / 4e-37 AT1G18170 261 / 3e-89 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10038345 [exp] 55 / 5e-09 AT4G19830 262 / 3e-89 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10036206 [exp] 50 / 1e-07 AT4G19830 260 / 4e-89 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10042897 [exp] 45 / 1e-05 AT3G60370 312 / 8e-109 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10009828 [exp] 45 / 2e-05 AT5G13410 314 / 1e-108 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10040937 [exp] 44 / 4e-05 AT5G13410 317 / 1e-109 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10028194 [exp] 43 / 9e-05 AT3G60370 305 / 2e-104 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10032895 [exp] 41 / 0.0006 AT4G26550 338 / 8e-116 Got1/Sft2-like vescicle transport protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048300 [exp] 161 / 4e-49 AT1G18170 249 / 3e-83 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.012G119800 [exp] 52 / 4e-08 AT4G19830 270 / 5e-92 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G068300 [exp] 45 / 1e-05 AT5G13410 332 / 4e-116 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.014G045600 [exp] 45 / 1e-05 AT3G60370 302 / 3e-104 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Lus10038954 pacid=23150299 polypeptide=Lus10038954 locus=Lus10038954.g ID=Lus10038954.BGIv1.0 annot-version=v1.0 ATGACGATGATGAAGATAACTCCATCCATGATAACAGGAGGAAGACAGCAGCCATTACTAAGCCAACCCTTCACTGCAACAAGAACAAGTTCAAGAAGCA GGAGCTTCAGCAGCATCAGTTGCTTACTTCAAACACAGAAGCTAATGATGACAGATTCGTCCGCTGGCTTGACACGGAGATCAGGACTTGGAGCAGCAGG GATCTCTTGGGCAGCTTTTCTAGCTTCCCGCATCGTGTCCCGGAAGAAGACCAAAGACACCAGAGACATGGAGAAGGAAGGAGTAGTGGTTTTGCCAAAT GGAATAAGGTACTATGATATGGAGGTAGGAACAGGGGAATGTCCAAGGGCAGGAGACTTGGTGGTGATGAATCTAAAGGGGAATGTAGTTGGAGGGAAAG ACGGGGAAGTGATTGTCGACACATTCGAAGGAATGAAGAAGAAGAAGCCGATGGCTATGGTGGTAATGGGTTCAAGGCCATACAGTAAAGGGATGTGTGA AGGGATAGAGCATGTGGTGAGATCAATGAAGGCTGGTGGTGTAAGAAGGGTTATTGTACCTCCTAGCTTCGGATTCGGTGTCCATGGTGCCGATTTCGGG TCTTCTTCTTCTCAAAACATCCCACCTTCTTCCACTCTCGAGTACATTGTTGAGGTTCACAGTGTCTCCACCTGA
AA sequence Show only first row Show all	>Lus10038954 pacid=23150299 polypeptide=Lus10038954 locus=Lus10038954.g ID=Lus10038954.BGIv1.0 annot-version=v1.0 MTMMKITPSMITGGRQQPLLSQPFTATRTSSRSRSFSSISCLLQTQKLMMTDSSAGLTRRSGLGAAGISWAAFLASRIVSRKKTKDTRDMEKEGVVVLPN GIRYYDMEVGTGECPRAGDLVVMNLKGNVVGGKDGEVIVDTFEGMKKKKPMAMVVMGSRPYSKGMCEGIEHVVRSMKAGGVRRVIVPPSFGFGVHGADFG SSSSQNIPPSSTLEYIVEVHSVST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18170			FKBP-like peptidyl-prolyl cis-...		Lus10038954 [exp]	0	1
AT1G30380		PSAK	photosystem I subunit K (.1)		Lus10012086 [exp]	2.2	0.9868
AT1G30380		PSAK	photosystem I subunit K (.1)		Lus10007399 [exp]	3.5	0.9834
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10018385 [exp]	4.5	0.9790
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Lus10025798 [exp]	4.6	0.9828
AT2G24020			Uncharacterised BCR, YbaB fami...		Lus10015490 [exp]	5.8	0.9605
AT2G20260		PSAE-2	photosystem I subunit E-2 (.1)		Lus10011913 [exp]	6.7	0.9789
AT1G22630			unknown protein		Lus10018614 [exp]	6.9	0.9613
AT4G12800		PSAL	photosystem I subunit l (.1)		Lus10002143 [exp]	7.0	0.9753
AT1G67700			unknown protein		Lus10006442 [exp]	7.1	0.9661
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Lus10002084 [exp]	7.3	0.9769

Compare expression of checked genes

Lus10038954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.