Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73660 495 / 4e-159 protein tyrosine kinase family protein (.1) AT1G18160 483 / 9e-155 Protein kinase superfamily protein (.1) AT1G08720 409 / 2e-127 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT5G11850 405 / 1e-126 Protein kinase superfamily protein (.1) AT5G03730 337 / 1e-101 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT5G49470 322 / 7e-100 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06620 328 / 9e-99 PAS domain-containing protein tyrosine kinase family protein (.1) AT1G67890 319 / 1e-95 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06640 317 / 2e-95 PAS domain-containing protein tyrosine kinase family protein (.1) AT3G06630 301 / 6e-90 protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027247 [exp] 1638 / 0 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10031341 [exp] 562 / 0 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10009062 [exp] 556 / 0 AT1G73660 673 / 0.0 protein tyrosine kinase family protein (.1) Lus10004124 [exp] 410 / 8e-129 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10000937 [exp] 409 / 2e-128 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10014368 [exp] 339 / 5e-102 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10023865 [exp] 338 / 1e-101 AT5G03730 1041 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10016912 [exp] 323 / 1e-97 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10037772 [exp] 321 / 4e-96 AT3G06620 919 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G040100 [exp] 1038 / 0 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.012G048400 [exp] 1003 / 0 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1) Potri.005G047600 [exp] 413 / 6e-129 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.013G034800 [exp] 410 / 8e-128 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.006G229400 [exp] 407 / 1e-126 AT5G11850 520 / 2e-170 Protein kinase superfamily protein (.1) Potri.018G053800 [exp] 401 / 2e-124 AT5G11850 517 / 2e-169 Protein kinase superfamily protein (.1) Potri.008G105100 [exp] 335 / 2e-101 AT5G49470 948 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) Potri.016G095750 [exp] 334 / 3e-100 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.010G146000 [exp] 328 / 9e-99 AT3G06620 953 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Potri.002G111200 [exp] 330 / 5e-98 AT4G24480 1020 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10038955 pacid=23150269 polypeptide=Lus10038955 locus=Lus10038955.g ID=Lus10038955.BGIv1.0 annot-version=v1.0 ATGAAGAGCCTGTTTAAGAAGCTTCATATTACTAACCAGCAGGCGATTTCATCATCTTCAGAAGGGTCAAGTAATTCACCAAGAGCAAGTAAGTTTGGTG GTGGTGGTGATGTTTCAGTTTCATCACCATCCCATGAGCACAACAAACCCTTTTCAGGTATTTCAAATTGGCTGAGTACAGTTAAGATCAATAGGAAGAG CATTAGCCCTCCGAATTCGTCTCGAGGGGCGAAGATGAAGCCGAATCAGAATGATTCGGCCTCCAGTACTAGCTGTGGTGGCACCCCTAGAGGTGGTGCT GAGATTGATGAGGAGTATCAGGTGCAAATGGCCTTGGAGCTTAGTGCAATTGAGGATCCTGAGGCTGCTCAAATTGAAGCTGTCAAGCAGATTAGCTTGG TGGGCTCTGATGCTGATCTTGGGAAGAACACTCCTGCTGAGGTTCTTGCTTACCGTTACTGGAATTACAATGCTCTAAGCTACGACGACAAGATCGTGGA CGGCTTCTACGACCTGTACGGAATATCCATCGATTCCCAATCAGACAGAATGCCTTCCCTGATCGAGTTACAAGGAGCTCTCGTCTCAGAAAGCATCACT TGGGAGGCAGTGCTAGTTGATAGGGCTACCGACGCGAATCTGCTGAAACTCGAACGTAAGGCACAAGAAATTGCAAGCGAGACGAGGACGGATGAATCTC TGGTTCTTCTTGTGGACGGCAATCTGGTCAAGAAACTAGCTGATCTAGTTTCTGGCTACATGGGAGGACCGGTTGGAGACCCCCAGAACATGTCGGTAGC ATGGAGACGCCTTAGCTACAGTTTGAGAGCAACCCTTGGTAGCATGGTTTTGCCATTGGGGTCTCTAACTATTGGTCTGGCTCGCCATCGCGCACTGATG TTCAAGGTTTTAGCTGATAGTGTAGGCATACCGAGCCGATTGTTGAAAGGAAATCAGTTCACGGGGTCAGACGATGTGGTCATAAACTTTGTGAAGCTTG ATGATGGAAGGGAGTACATTATCGATCTAATGGCGGATCCCGGGACTCTAATCCCTTCTGATGCAGCTGGATTACATCCAGAGCACGATGATCTTTCCTT CTCGGCCAGTCCTTTGTCTAGAGACATTGAATCCTCTCATCTAGCCTCTTCTAGTAGTGGGGTGGCAAGTTCATTCGGAGAGACTTCGACCTCCGAAGTT GGAAACACTACCGCTTCGAGTAATCAATGCAACGAAAGCGACAAAGAATCCCCGGATGTATTAAAGAAGCCACAGAAGGAGATTGCTCCTAGTAGCAGCA GACAAAACTATACTTATACACACGCGAGATCGCCTTCGTGGACCGAGGGAATAAGCTCTCCGGCAGCACATAAGAAGAAAGTGAAAGACGTTTCGAGATA CATGATAAACGCTGCGAAGGAGAATCCGCAGCTGGCTCAGAAACTTCACGATGTGCTGTTAGAGAGCGGTGTCGTTGCTCCGCCTAGCTTGTTTACCGAA TTTGAGCAGTTGAGGTTGAAGGATGTTGATTCCGGTCCTGCTCGATTTTTGCCTCCTCTGCCTCGTAAAGAAACTTCCGTGCAGCCGAGGCTGTCAACTC CTGAGACCATAGATGAGCCTAATCCGGCTCGATTTCTGCCACCTCTACCTCGGTGCAAACAGCATTCGAAAACAACTTCACCACAGGGTCAGCTCGAGCC ACTTAGATTCCATGAGTCTGAAGCAACTCCTGTGAGCTCTGCAAAAAATGTTCCGGTCGCTGCTGCTGTGGTGGCTGCAGCAGCTGTTGTCGCTTCTTCG ATGGTGGTTGCTGCTGCTAGGCCAAACACCGAATCGAGCCTCGAATTACCAATCGCTGCTGCTGCTGCAGCTGTCGTGGCATCAAGTGCAGCAGCCGTTG GTGTGAAAATTGATGGAGATGGGGACCACCGGGGTCAAGAACACGATACAATTGTGGTGAATTCGGAGGGAGAGAGAACGTCTGATAGATCGACGGGGAA CGATAGCTCCAGGTCGGATATCACTCTAGATGATGTTGCAGAGTGCGAGATCCCGTGGGAAGATATTACTTTGGGCGAACGAATTGGACTTGGTTCATAT GGAGAAGTTTACCATGGAGAATGGCATGGAACTGAAGTTGCTGTGAAGAGATTCCTAGATCAGGATATTTCAGGGGAATCTTTAATGGAGTTCAAAAGTG AGGTCCAAATCATGAAGCGAGTTCGACATCCGAACGTGGTTCTTTTCATGGGAGCTGTGACGCGTGCTCCAAATCTTTCGATAGTTTCGGAGTTTCTTCC CAGAGGTAGTTTGTACCGACTACTTCACCGTCCTAACAACCAGTTGGACGAGAGAAGACGACTCCGGATGGCACTTGATGCAGCTCGGGGGATGAATTAC CTCCATAACTGCAGTCCAGTAATCGTTCATCGTGATTTGAAGTCTCCGAATCTCTTAGTTGATCGAAACTGGGTTGTGAAGGTATGCGATTTTGGTCTAT CTAGAATGAAGCACAGCACATTCCTCTCCTCGAGATCAACTGCAGGAACTGCCGAGTGGATGGCTCCAGAAGTGCTGAGAAATGAACCTTCAGATGAGAA CTACGGGGTTATACTGTGGGAGCTATGCACGATGCAACAACCGTGGGGAGGAATGAATCCGATGCAAGTCGTTGGTGCTGTGGGATTCCAGCACCGACGA CTCGAGATTCCAAACGATATGGATCCTGCTGTCGCAGATATTATTCAGAGTTGCTGGCAAACAGATCCGAAACTGAGGCCGACATTTGCAGAGATCATGG CTGCATTGAAGCCACTGCAAAAGCCTATAACCAGCAGCTCGAGACGTGCAAGAACCGCATCTGTGACAAGCCCATTGCCAGAAGATGCTGCAAAAGACCA GGCAGGGTAG
AA sequence Show only first row Show all	>Lus10038955 pacid=23150269 polypeptide=Lus10038955 locus=Lus10038955.g ID=Lus10038955.BGIv1.0 annot-version=v1.0 MKSLFKKLHITNQQAISSSSEGSSNSPRASKFGGGGDVSVSSPSHEHNKPFSGISNWLSTVKINRKSISPPNSSRGAKMKPNQNDSASSTSCGGTPRGGA EIDEEYQVQMALELSAIEDPEAAQIEAVKQISLVGSDADLGKNTPAEVLAYRYWNYNALSYDDKIVDGFYDLYGISIDSQSDRMPSLIELQGALVSESIT WEAVLVDRATDANLLKLERKAQEIASETRTDESLVLLVDGNLVKKLADLVSGYMGGPVGDPQNMSVAWRRLSYSLRATLGSMVLPLGSLTIGLARHRALM FKVLADSVGIPSRLLKGNQFTGSDDVVINFVKLDDGREYIIDLMADPGTLIPSDAAGLHPEHDDLSFSASPLSRDIESSHLASSSSGVASSFGETSTSEV GNTTASSNQCNESDKESPDVLKKPQKEIAPSSSRQNYTYTHARSPSWTEGISSPAAHKKKVKDVSRYMINAAKENPQLAQKLHDVLLESGVVAPPSLFTE FEQLRLKDVDSGPARFLPPLPRKETSVQPRLSTPETIDEPNPARFLPPLPRCKQHSKTTSPQGQLEPLRFHESEATPVSSAKNVPVAAAVVAAAAVVASS MVVAAARPNTESSLELPIAAAAAAVVASSAAAVGVKIDGDGDHRGQEHDTIVVNSEGERTSDRSTGNDSSRSDITLDDVAECEIPWEDITLGERIGLGSY GEVYHGEWHGTEVAVKRFLDQDISGESLMEFKSEVQIMKRVRHPNVVLFMGAVTRAPNLSIVSEFLPRGSLYRLLHRPNNQLDERRRLRMALDAARGMNY LHNCSPVIVHRDLKSPNLLVDRNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNEPSDENYGVILWELCTMQQPWGGMNPMQVVGAVGFQHRR LEIPNDMDPAVADIIQSCWQTDPKLRPTFAEIMAALKPLQKPITSSSRRARTASVTSPLPEDAAKDQAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18160			Protein kinase superfamily pro...		Lus10038955 [exp]	0	1
AT1G18160			Protein kinase superfamily pro...		Lus10027247 [exp]	1.0	0.9055
AT1G55090			carbon-nitrogen hydrolase fami...		Lus10017307 [exp]	8.7	0.8185
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10012602 [exp]	13.0	0.8060
AT5G04420			Galactose oxidase/kelch repeat...		Lus10028825 [exp]	13.8	0.8076
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10008040 [exp]	13.9	0.8213
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10024966 [exp]	14.4	0.8144
AT5G10470		KAC1, KCA1	KINESIN CDKA;1 ASSOCIATED 1, k...		Lus10035940 [exp]	15.0	0.8547
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10010100 [exp]	16.5	0.7993
AT5G11670		ATNADP-ME2	Arabidopsis thaliana NADP-mali...		Lus10006036 [exp]	16.9	0.8336
AT1G27170			transmembrane receptors;ATP bi...		Lus10004905 [exp]	19.1	0.7958

Compare expression of checked genes

Lus10038955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.