Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18040 721 / 0 ATMPK9 MAP kinase 9 (.1.2) AT1G18150 702 / 0 ATMPK8 Protein kinase superfamily protein (.1.2.3) AT1G73670 702 / 0 ATMPK15 MAP kinase 15 (.1) AT5G19010 657 / 0 ATMPK16 mitogen-activated protein kinase 16 (.1) AT2G42880 637 / 0 ATMPK20 MAP kinase 20 (.1) AT1G53510 608 / 0 ATMPK18 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) AT3G14720 603 / 0 ATMPK19 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) AT2G01450 597 / 0 ATMPK17 MAP kinase 17 (.1.2.3.4) AT4G01370 299 / 2e-97 ATMPK4 MAP kinase 4 (.1) AT3G45640 291 / 1e-94 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027248 [exp] 788 / 0 AT3G18040 741 / 0.0 MAP kinase 9 (.1.2) Lus10041234 [exp] 637 / 0 AT5G19010 911 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10021945 [exp] 625 / 0 AT5G19010 912 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10021784 [exp] 624 / 0 AT1G73670 706 / 0.0 MAP kinase 15 (.1) Lus10005568 [exp] 606 / 0 AT1G53510 853 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10013702 [exp] 603 / 0 AT1G53510 845 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10034601 [exp] 513 / 5e-180 AT1G73670 597 / 0.0 MAP kinase 15 (.1) Lus10018127 [exp] 301 / 5e-98 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10008339 [exp] 301 / 8e-98 AT2G43790 691 / 0.0 MAP kinase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048600 [exp] 752 / 0 AT3G18040 793 / 0.0 MAP kinase 9 (.1.2) Potri.015G040300 [exp] 736 / 0 AT3G18040 767 / 0.0 MAP kinase 9 (.1.2) Potri.010G029700 [exp] 660 / 0 AT5G19010 921 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.008G200800 [exp] 659 / 0 AT5G19010 922 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.002G059900 [exp] 645 / 0 AT2G42880 897 / 0.0 MAP kinase 20 (.1) Potri.005G201800 [exp] 643 / 0 AT2G42880 904 / 0.0 MAP kinase 20 (.1) Potri.010G112200 [exp] 638 / 0 AT1G73670 687 / 0.0 MAP kinase 15 (.1) Potri.008G130000 [exp] 630 / 0 AT1G73670 697 / 0.0 MAP kinase 15 (.1) Potri.011G102500 [exp] 612 / 0 AT3G14720 874 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) Potri.001G381300 [exp] 605 / 0 AT3G14720 875 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10038956 pacid=23150361 polypeptide=Lus10038956 locus=Lus10038956.g ID=Lus10038956.BGIv1.0 annot-version=v1.0 ATGGCTCATCACAAGAAGGGATCGCCAGAGGCGGATTTTTTCACCGAGTACGGTGAGGCGAGCAAGTACCAGATCCAGGAAGTGGTCGGGAAGGGGAGCT ACGGGGTGGTGGGGTCGGCGATCGAGACGCAGACGAACGAGAAGGTTGCGATCAAGAAGATCAACGATGTGTTTGAGCATGTCTCGGATGCTACAAGGAT CCTGCGGGAGATCAAATTGTTGAGGCTATTGCGACACCCGGACATCGTGGAGATCAAGCACATCATGCTCCCGCCTTCCCGACGAGAGTTCAAGGACATT TACGTGGTGTTCGAGCTGATGGAGTCCGATCTCCACCAGGTGATCAAGGCTAACGACGACCTGACTCCCGAGCACTACCAGTTTTTTCTGTACCAACTCC TCCGCGGGTTGAAGTACATTCACACCGCTAATGTGTTTCATAGAGATTTGAAGCCAAAGAACATTCTTGCAAATGCTGATTGTAAATTGAAGATTTGTGA CTTTGGTTTGGCTCGAGTGTCGTTCAACGATGCTCCGTCCGCCATTTTTTGGACGGATTATGTTGCCACAAGATGGTATCGTGCCCCTGAGCTTTGTGGA TCATTTTTCTCTAAATACACTCCTGCAATTGACATATGGAGCATAGGATGCATATTTGCTGAAATGCTTACTGGAAAGCCACTGTTCCCTGGCAAAAATG TGGTTCATCAGTTGGATCTCATGACTGATTTACTGGGAACTCCACCCGTCGAATCGATTTCACGGATTCGAAACGAGAAGGCAAGAAGGTACCTTAGTAG CATGCGCAAGAAGCAACCGGTCCCATTCTCGCAGAAGTTCCCCAAATCGGATCCTCTAGCGCTCAGCTTGCTCGAAATACTGCTCGCATTCGATCCTAAA GATCGTCCTACTGCTGAGGAGGCGTTGGCGGATTCTTACTTCAGTGGCTTGTCAAACGTTGAACGCGAACCGTCCACTCATGCTATCTCGAAACTAGAGT TCGAGTTCGAGAGGAGGAAACTGACTAAAGATGATGTCAGAGAACTAATCTACAGAGAGATTTTAGAATACCATCCTAAAATGTTGCAAGAGTATCTTAA AGGTGGTGAACAAACTAGTTTCTTGTATCCAAGTGGTGTTGATCGATTTAAGAGACAATTTGCTCATCTTGAAGAGCATCATAGTAAAGGTGAAAAAAGT TCACCTCTCCAAAGACAACATGCTTCATTGCCAAGAGAGAGAGTCCCTAAAGAGCAAGAAGGGGAAGAAGAAAGTGAGCATGAGGGAAGAGCAGTTGCAA CCACACTTGATAGCCCTCCAGAAGGAGGTGGTCAACATAACAAGTCAACACAAAGGAGCCTCCTGAAGAGTGCTAGCATTAGTGCTTCCAAGTGCATTGG TGTCAAGGCCAAGAAGGAATCGTCGGAGGAAGTCATTACCGAGGTTAACGACGAAACTATCAATGAGTTGGTCGACAAGGTTGCTATTCTCCACAACACA TAG
AA sequence Show only first row Show all	>Lus10038956 pacid=23150361 polypeptide=Lus10038956 locus=Lus10038956.g ID=Lus10038956.BGIv1.0 annot-version=v1.0 MAHHKKGSPEADFFTEYGEASKYQIQEVVGKGSYGVVGSAIETQTNEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDI YVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCG SFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDLLGTPPVESISRIRNEKARRYLSSMRKKQPVPFSQKFPKSDPLALSLLEILLAFDPK DRPTAEEALADSYFSGLSNVEREPSTHAISKLEFEFERRKLTKDDVRELIYREILEYHPKMLQEYLKGGEQTSFLYPSGVDRFKRQFAHLEEHHSKGEKS SPLQRQHASLPRERVPKEQEGEEESEHEGRAVATTLDSPPEGGGQHNKSTQRSLLKSASISASKCIGVKAKKESSEEVITEVNDETINELVDKVAILHNT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18040		ATMPK9	MAP kinase 9 (.1.2)		Lus10038956 [exp]	0	1
					Lus10012269 [exp]	1.4	1.0000
AT5G04347			Plant self-incompatibility pro...		Lus10029375 [exp]	1.7	1.0000
AT5G48540			receptor-like protein kinase-r...		Lus10030777 [exp]	2.0	1.0000
AT1G21000			PLATZ transcription factor fam...		Lus10005350 [exp]	2.0	1.0000
AT4G16640			Matrixin family protein (.1)		Lus10037419 [exp]	4.5	0.9815
AT5G52605			Defensin-like (DEFL) family pr...		Lus10031095 [exp]	4.5	1.0000
AT5G56670			Ribosomal protein S30 family p...		Lus10019054 [exp]	4.9	1.0000
					Lus10035508 [exp]	5.3	1.0000
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10006147 [exp]	6.3	0.9974
					Lus10000882 [exp]	6.7	0.9894

Compare expression of checked genes

Lus10038956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.