Plant FIBer expression Database

Lus10038957 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G09360 329 / 2e-105 Cyclin/Brf1-like TBP-binding protein (.1)
AT2G45100 276 / 1e-85 Cyclin/Brf1-like TBP-binding protein (.1)
AT2G01280 246 / 3e-74 MEE65 maternal effect embryo arrest 65, Cyclin/Brf1-like TBP-binding protein (.1)
AT1G30455 87 / 6e-19 transcription regulators;translation initiation factors;zinc ion binding;transcription activators (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027249
[exp]
61 / 6e-10 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G246100
[exp]
505 / 9e-174 AT3G09360 419 / 8e-140 Cyclin/Brf1-like TBP-binding protein (.1)
Potri.009G039100
[exp]
499 / 4e-168 AT3G09360 412 / 7e-134 Cyclin/Brf1-like TBP-binding protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07741 BRF1 Brf1-like TBP-binding domain
CL0065 Cyclin PF00382 TFIIB Transcription factor TFIIB repeat
Representative CDS sequence
>Lus10038957 pacid=23150558 polypeptide=Lus10038957 locus=Lus10038957.g ID=Lus10038957.BGIv1.0 annot-version=v1.0
ATGGTGTACTGTGGTGCCTGTGCAAAGAGTGTTCAAGGTCATCGCGATGAAAACGGTACCTTGTCCTGTGATGAATGTGGAAAGGTTTTGCACTACGATA
ATTTCTCAACTGAGGCTACATTTGCTAAAAACGCTTCTGGCCAGAGCCAAATGATGGGAAGACTAGTGAGGAGCATTCAGGATGAAAGCTTTTCGCGAGA
AAGGTTGTTGGAAAGAGCTCGTGATGATATAGTAATGCTGAAGGACGGCTTAGGCATGGGTGAAAATCTCTCCTTAGTTGACCAAGCTATGTGCTACTAC
CGACAGTTGAGAGGAATTTCACCAGGGGCCGTAGAACAGATCAAGTACAAGCTGTATGCCTTTATATTGCATGCCGGTGCGGTCTTTTTGCAGCTCTGTA
AAGTTTTGCACCTTACAGAGCATCCCATCTGTCAAAAATTGCTTGATCCTTCTATTTTCATACACAAATATACTGCTAACTTAACAGGAGGTAGAAACAA
AGAAATTTCTGATGCTGCACTTGCCATTATAGCAAGCATGAATCGTGATTGGATGCAGACAGGAAGAAGGCCCAGTGGACTGTGGGGTGCTGCACTTTAC
ATAGCTGCACTTGCCCACGGTGTCCAACGTTCGAAAAAAGACATTTTGAGGTTGGTGCATGTTTGTGAAGCAACACTGTCAAAGCGATTGGTTGAATTCG
AAAATACAGAGTCATCAAGCTTGACGATTGAGGAATTGAATGAAAAGGCGGAGGAGCTTAAGGATAGTCCTGCCTATCAACCAAGTTTTGGCGCAAAGGA
AGTACACACAACAGAGTTGCTTTGTCACCACAAGGGGAGTAGCCAGCATTTTGCTTGTGGACTTTGTGAAGCTTGTTATGCAATCGTAATAGGATTTGAG
GGGGGTTCAGATCCTCCAGCGTTCCAAAAAGCTGAAAAGCAAAGAATGGATAAGCAATTGGAGATGGAGAAAGCCAATGACGGAAATTTGGAGGAAGAGC
ATATATACAGAGAGGAGATTATGCCATCTGCCGAGCAAGAAACCGTGGGGAAATCAACCGAGAATGAAGAAAGATTGACAGCGACAGATGATGGTGATGA
ATCAGACAACTTTTCTGATATAGACGATGCTGAGGTTAACGGATACCTTTTGAATGAACTGGAGAAAGTCCGGAAAAAGGGCGTGTGGGAAAAACTCAAT
TGGGAGTATCTCGAGGAACAAGCGGAAAAAGAAGCAACTGAAGCTGCTGCAAGGAAAGCCTGTGAGGAAAACTTACGGAATTGTTCAGGAGATTTGCAAG
CTGCCAAGGATCTCGATGCTGCAGTGTCAGCAGCTATGGAGAAATCCAAAAAGGAAAGGCAGCGAAAACGAGCTGCAGATGCACAAAACGCCACTCCTGC
TCAATCTGCTGCGGAAGCTGTCTGCAGAATGGTGGCCAAGAAGAAATTATGCTCGAAGGTCAACGAAGATGCGATTAAAAAACTCTTTGGTGATGATGAC
TACTATAGCTCCGATAATGCGAAGAAACAACGAACGGACTCCGACGATGACGGTGAGGTTCCACTTAAAGCCGGCAAAGATCTAGGGACCATCGAGGAGG
AGGACGACGAAGGCGGTCACGATGGTGATGAAGTTCCACTTGACAATGATTATGATGATCCTGAAGAAGACGAAAACTCCGATCCCGACTTGCGATATGA
TGGCTTCTGA
AA sequence
>Lus10038957 pacid=23150558 polypeptide=Lus10038957 locus=Lus10038957.g ID=Lus10038957.BGIv1.0 annot-version=v1.0
MVYCGACAKSVQGHRDENGTLSCDECGKVLHYDNFSTEATFAKNASGQSQMMGRLVRSIQDESFSRERLLERARDDIVMLKDGLGMGENLSLVDQAMCYY
RQLRGISPGAVEQIKYKLYAFILHAGAVFLQLCKVLHLTEHPICQKLLDPSIFIHKYTANLTGGRNKEISDAALAIIASMNRDWMQTGRRPSGLWGAALY
IAALAHGVQRSKKDILRLVHVCEATLSKRLVEFENTESSSLTIEELNEKAEELKDSPAYQPSFGAKEVHTTELLCHHKGSSQHFACGLCEACYAIVIGFE
GGSDPPAFQKAEKQRMDKQLEMEKANDGNLEEEHIYREEIMPSAEQETVGKSTENEERLTATDDGDESDNFSDIDDAEVNGYLLNELEKVRKKGVWEKLN
WEYLEEQAEKEATEAAARKACEENLRNCSGDLQAAKDLDAAVSAAMEKSKKERQRKRAADAQNATPAQSAAEAVCRMVAKKKLCSKVNEDAIKKLFGDDD
YYSSDNAKKQRTDSDDDGEVPLKAGKDLGTIEEEDDEGGHDGDEVPLDNDYDDPEEDENSDPDLRYDGF

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G09360 Cyclin/Brf1-like TBP-binding p... Lus10038957
[exp]
0 1
AT2G39970 PXN, PMP38, APE... peroxisomal NAD carrier, perox... Lus10014839
[exp]
2.8 0.8805
AT5G15340 Pentatricopeptide repeat (PPR)... Lus10014653
[exp]
2.8 0.8947
AT4G02570 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.... Lus10024562
[exp]
7.5 0.8786
Lus10024539
[exp]
11.0 0.8274
AT4G26240 unknown protein Lus10032703
[exp]
11.3 0.8540
AT3G27260 GTE8 global transcription factor gr... Lus10014609
[exp]
12.3 0.8528
AT1G79020 Enhancer of polycomb-like tran... Lus10034778
[exp]
13.0 0.8613
AT4G10050 esterase/lipase/thioesterase f... Lus10041054
[exp]
13.8 0.8671
AT3G60190 ADL1E, ADL4, AD... ENHANCED DISEASE RESISTANCE 3,... Lus10019506
[exp]
14.1 0.8634
AT1G17720 ATBBETA, ATB BE... Protein phosphatase 2A, regula... Lus10042101
[exp]
17.0 0.8636

Lus10038957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.