Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18090 314 / 1e-102 5'-3' exonuclease family protein (.1.2) AT1G29630 162 / 3e-44 5'-3' exonuclease family protein (.1.2.3) AT5G26680 49 / 3e-06 5'-3' exonuclease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027250 [exp] 536 / 0 AT1G18090 495 / 1e-170 5'-3' exonuclease family protein (.1.2) Lus10011991 [exp] 171 / 2e-47 AT1G29630 626 / 0.0 5'-3' exonuclease family protein (.1.2.3) Lus10002782 [exp] 157 / 3e-42 AT1G29630 634 / 0.0 5'-3' exonuclease family protein (.1.2.3) Lus10004608 [exp] 141 / 5e-38 AT1G29630 481 / 6e-165 5'-3' exonuclease family protein (.1.2.3) Lus10000270 [exp] 56 / 1e-08 AT5G26680 512 / 0.0 5'-3' exonuclease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G041400 [exp] 355 / 2e-118 AT1G18090 584 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.011G077001 [exp] 176 / 4e-49 AT1G29630 750 / 0.0 5'-3' exonuclease family protein (.1.2.3) Potri.013G000700 [exp] 60 / 9e-10 AT5G26680 650 / 0.0 5'-3' exonuclease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0464 [flax] [poplar] 5_3_exonuc_C PF00867 [flax] [poplar] XPG_I XPG I-region
Representative CDS sequence Show only first row Show all	>Lus10038958 pacid=23150382 polypeptide=Lus10038958 locus=Lus10038958.g ID=Lus10038958.BGIv1.0 annot-version=v1.0 ATGGGAATCAAAGATCTGCTGAGGTTCACGAAACCCTATATTGAGCCAGTCCACATCAAGAAATACGCCGGCAAACGAGGTTCGTCCGTTTTCAAACTTT CAGGTGGGCATCGATGCGTATTGCTGGCTGCACAAAGGAGGAAAAGAGAAACTAATCATGAGTTGGCAATAGCAAAGCTCAAAGAAGGGGATGCTAGTGC TGCAAGGGAGTTCTTTCAGAAAGCAGTGAACATCACTCCATCAATGGCGTATCAGTTGATTAAGATACTGAAATCCAAAAAGGTAGAGTTCGTGGTAGCT CCATACGAGGCCGATGCACAGCTAGTCTATCTATCAAGCCTTGGAGAAGCTAAAGGTGGAGTATCAGCTGTGATCACAGAGGACAGTGATCTATTGGCCT ATGGTTGTCCAGCTACTATCTTCAAGATGGATCAACATGGCAATGGCGAGGAGCTGATCCTGGATGGTGTGTTCGATCCAGAAATCTCTTGTAAATCATC ATTTGGACATTTCGATATGGAGCTGTTCACAGGCATGTCTGTCCTAGCGTTTTGTGATTTTCTGTCATCGGTTCCTGGTATCGGCATAGTGAAGGCTCAT ACGTTCGTTTTATCAGTGTTGAAGCTGGACAAAGGCAGTCAGATGCCAGACGATTACATAAAGTCTTTCAGAGAAGCACTTGCAGTTTTCCGACATGCTA CAATTTACGATCCGAAGGCAAAATCAATCAAGCGCATGAACCCCCTTCCACAAGATCTTGCAGACTACTTTACTGGGAAGCTCGATTTCCTCGGACCAAA AATACCTGCTTCAGTAGCAACTGCAATAGCTGAAGGAAACACAAACCCTTCGAATATGGAGCTCTTTGATCTTCTGTTGTCCAGCTCAACCTCTGAAACA GTTGTCACAGAAGTCCCCCTGGAATCTTTGAATAAACCTGAAGTTGCCAAGATCTTCAGACGGAAATGCAGCTTCGTGGATGCAGAAGCGTTCCACGAAG AGGAGAATCTCTGTATGTCTTCAACTAACTCTACCATGCCTACTGCCTCTTTACTGTTGATGAATAATCTAAAACCAATTTGA
AA sequence Show only first row Show all	>Lus10038958 pacid=23150382 polypeptide=Lus10038958 locus=Lus10038958.g ID=Lus10038958.BGIv1.0 annot-version=v1.0 MGIKDLLRFTKPYIEPVHIKKYAGKRGSSVFKLSGGHRCVLLAAQRRKRETNHELAIAKLKEGDASAAREFFQKAVNITPSMAYQLIKILKSKKVEFVVA PYEADAQLVYLSSLGEAKGGVSAVITEDSDLLAYGCPATIFKMDQHGNGEELILDGVFDPEISCKSSFGHFDMELFTGMSVLAFCDFLSSVPGIGIVKAH TFVLSVLKLDKGSQMPDDYIKSFREALAVFRHATIYDPKAKSIKRMNPLPQDLADYFTGKLDFLGPKIPASVATAIAEGNTNPSNMELFDLLLSSSTSET VVTEVPLESLNKPEVAKIFRRKCSFVDAEAFHEEENLCMSSTNSTMPTASLLLMNNLKPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18090			5'-3' exonuclease family prote...		Lus10038958 [exp]	0	1
					Lus10037800 [exp]	6.0	0.7476
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10001952 [exp]	8.1	0.7420
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10000468 [exp]	8.5	0.8065
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10003541 [exp]	9.4	0.8174
AT3G19610			Plant protein of unknown funct...		Lus10002129 [exp]	12.2	0.6663
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010985 [exp]	23.9	0.7307
AT1G03360		ATRRP4	ribosomal RNA processing 4 (.1...		Lus10008171 [exp]	31.6	0.7442
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011576 [exp]	34.3	0.6831
AT3G27470			Protein of unknown function (D...		Lus10003659 [exp]	40.0	0.6589
					Lus10018751 [exp]	52.0	0.7003

Compare expression of checked genes

Lus10038958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.