Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18200 417 / 7e-146 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G75500 367 / 1e-125 WAT1 Walls Are Thin 1 (.1.2) AT3G53210 293 / 3e-97 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G30420 208 / 6e-64 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G45870 193 / 4e-58 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G19185 187 / 1e-55 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 184 / 1e-54 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G45370 183 / 3e-54 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT4G08290 180 / 4e-53 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G21890 180 / 7e-53 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027251 [exp] 600 / 0 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10024301 [exp] 337 / 2e-113 AT1G75500 575 / 0.0 Walls Are Thin 1 (.1.2) Lus10010647 [exp] 278 / 4e-91 AT1G75500 492 / 6e-175 Walls Are Thin 1 (.1.2) Lus10041801 [exp] 244 / 7e-79 AT1G75500 365 / 6e-126 Walls Are Thin 1 (.1.2) Lus10028351 [exp] 204 / 2e-63 AT3G53210 311 / 1e-105 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023211 [exp] 200 / 4e-61 AT4G30420 378 / 1e-130 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10034776 [exp] 201 / 1e-60 AT4G19185 525 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10033316 [exp] 199 / 5e-60 AT4G19185 520 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10030168 [exp] 197 / 7e-60 AT3G30340 369 / 7e-127 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G042900 [exp] 464 / 2e-164 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.005G233600 [exp] 362 / 1e-123 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.002G029100 [exp] 340 / 2e-115 AT1G75500 578 / 0.0 Walls Are Thin 1 (.1.2) Potri.007G017800 [exp] 310 / 7e-104 AT1G75500 414 / 4e-144 Walls Are Thin 1 (.1.2) Potri.008G165600 [exp] 204 / 2e-62 AT5G07050 281 / 4e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.018G099500 [exp] 202 / 1e-61 AT4G30420 402 / 7e-140 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G453000 [exp] 202 / 1e-61 AT3G30340 369 / 4e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 200 / 8e-61 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G040200 [exp] 197 / 6e-60 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 196 / 2e-59 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10038959 pacid=23150495 polypeptide=Lus10038959 locus=Lus10038959.g ID=Lus10038959.BGIv1.0 annot-version=v1.0 ATGGCATCAGAAAGAGTGAAACTTATTCTGGGATTGCTGGTTCTTCAGCTGTGCTTCTCAGGGTTCCACATTGTGTCAAGGGTTGCACTCAACATTGGAG TCAGCCAAGTTGTTTACCCTGTTTACAGAAACACCATTGCCCTCTTCCTCTTGGCTCCCTTTGCCTACTTTTTGGAGAAGAAGGAAAGGCCACCACTTAC ATTGGCCTTGCTGGTTCAGTTCTTCCTTCTGGCATTAGTTGGGATCACAGCAAACCAAGGGTTCTATCTGCTGGGTTTGTACTATGCATCTCCAACATTT GCATCAGCAATGCAGAACTCAGTCCCTGCAATCACTTTCCTTATGGCTTCTATTCTTGGAGTGGAGCAAGTGAATCTGAGGAGAAGAGATGGGTTGGCCA AAGTGGTAGGGACAATTGCATGCATAGGAGGAGCCACAATCATCACTCTTTACAAAGGCCCTCCTCTCCTCCACAACCATGGCACTAACAACAACCAAGA GCAGCAGCCATTAATGGACTTTGATCATGACAGTAATAAGAAGTTGCAGAACTGGACATGGGGTTGCATCTACCTCCTTGGCCACTGCCTCTCCTGGGCT GGCTGGATGGTCTTTCAGGCTCCAGTGCTGAAGAAGTACCCTGCAAAGCTGACAATGACATCTTTCACATGCTTCTTTGGTCTGATCCAGTTCCTAGTCA TAGCTTTGTTCGTTGAAACCGACTTGAACAACTGGAAGCTCCATTCGCTGGAAGAGCTTTTCACCATCTTATACGCGGGAATTGTGGCATCTGGGATAGT GATTTCACTTCAGACATGGTGCATTCAGAAAGGAGGTCCAGTTTTTGTTGCAGTTTTCCAGCCATTGTCCACCATCTTAGTTGCTATCATGGCTTCTTTG ATCCTCGGTGATCAGCTCTACTCTGGAGGGATGATTGGAGCAGTGCTGATAATGTTTGGTCTGTACTGTGTCCTCTGGGGAAAGAATGAAGAGAAAAGAA GAACAATAATACTGTCAGAAGCAGTTAATAATTGTAAGGAGGATGACAGTTTGACTACCAACCTTCTGCAGCAACATGATCAAATCAATAAAGACACTGA CTTGCCATGA
AA sequence Show only first row Show all	>Lus10038959 pacid=23150495 polypeptide=Lus10038959 locus=Lus10038959.g ID=Lus10038959.BGIv1.0 annot-version=v1.0 MASERVKLILGLLVLQLCFSGFHIVSRVALNIGVSQVVYPVYRNTIALFLLAPFAYFLEKKERPPLTLALLVQFFLLALVGITANQGFYLLGLYYASPTF ASAMQNSVPAITFLMASILGVEQVNLRRRDGLAKVVGTIACIGGATIITLYKGPPLLHNHGTNNNQEQQPLMDFDHDSNKKLQNWTWGCIYLLGHCLSWA GWMVFQAPVLKKYPAKLTMTSFTCFFGLIQFLVIALFVETDLNNWKLHSLEELFTILYAGIVASGIVISLQTWCIQKGGPVFVAVFQPLSTILVAIMASL ILGDQLYSGGMIGAVLIMFGLYCVLWGKNEEKRRTIILSEAVNNCKEDDSLTTNLLQQHDQINKDTDLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10038959 [exp]	0	1
AT1G06930			unknown protein		Lus10024185 [exp]	1.4	0.9811
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001429 [exp]	2.8	0.9801
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10039399 [exp]	3.5	0.9783
AT5G60520			Late embryogenesis abundant (L...		Lus10036107 [exp]	4.9	0.9733
AT5G62280			Protein of unknown function (D...		Lus10027191 [exp]	6.3	0.9759
AT1G53130		GRI	GRIM REAPER, Stigma-specific S...		Lus10005544 [exp]	6.3	0.9732
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10021904 [exp]	7.0	0.9732
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001637 [exp]	7.4	0.9759
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10012901 [exp]	7.9	0.9730
AT4G00080		UNE11	unfertilized embryo sac 11, Pl...		Lus10030292 [exp]	8.2	0.9684

Compare expression of checked genes

Lus10038959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.