Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18060 971 / 0 transducin family protein / WD-40 repeat family protein (.1) AT2G01330 869 / 0 nucleotide binding (.1.2) AT5G52820 69 / 3e-12 WD-40 repeat family protein / notchless protein, putative (.1) AT2G43770 66 / 2e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 61 / 8e-10 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G34460 58 / 1e-08 ELK4, AGB1, ATAGB1 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) AT2G41500 58 / 1e-08 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT1G73720 58 / 1e-08 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT1G52360 58 / 2e-08 Coatomer, beta' subunit (.1.2) AT4G02730 57 / 2e-08 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027252 [exp] 1215 / 0 AT3G18060 979 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10042944 [exp] 901 / 0 AT3G18060 888 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10032444 [exp] 900 / 0 AT3G18060 884 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10039597 [exp] 79 / 4e-15 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10006916 [exp] 67 / 6e-12 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10029493 [exp] 68 / 9e-12 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10014674 [exp] 67 / 9e-12 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033092 [exp] 65 / 1e-10 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2) Lus10021059 [exp] 64 / 2e-10 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G049200 [exp] 1075 / 0 AT3G18060 1018 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.015G041200 [exp] 1072 / 0 AT3G18060 1000 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.009G058000 [exp] 70 / 2e-12 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.006G250200 [exp] 59 / 4e-09 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2) Potri.001G221000 [exp] 58 / 8e-09 AT2G26060 523 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.018G033300 [exp] 58 / 1e-08 AT4G32551 657 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Potri.006G045800 [exp] 58 / 1e-08 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.019G096900 [exp] 57 / 2e-08 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G197900 [exp] 57 / 4e-08 AT5G13480 760 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G051900 [exp] 56 / 4e-08 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10038960 pacid=23150261 polypeptide=Lus10038960 locus=Lus10038960.g ID=Lus10038960.BGIv1.0 annot-version=v1.0 ATGCCGCAGCTATCGGAGACTTACCCATCTGCTCCTTCCACCGACCGCGGCAGGGGGATCCTCATCTCCGGCCACCCGAAGACCAACTCAATCCTCTACA CGAACAACCGCTCCGTCCTCATCCTCAACCTCGACAACCCGCTCGACGTCTCCGTCTACGGCGACCATGCTTATCCGGCCACCGTCGCCCGATTCTCCCC CAACGGCGAGTGGATCGCCTCCGCGGACGCCTCCGGCACCGTCAGGATCTGGGGCGCCTACAATGATCATGTCCTCAAGAAGGAGTTCAAGGTCCTCACT GGTAGGATCGACGATCTCCAGTGGTCTTCTGATGGGATGAGGATCGTCGCCTGTGGCGACGGAAAGGGTAAATCGCTGGTTCGAGCTTTCATGTGGGATT CGGGGACTAATGTAGGGGAATTCGACGGGCATTCGAGGCGTGTGTTGAGCTGTGCGTTTAAGCCGACGAGGCCGTTTCGGATTGTGACTTGTGGTGAGGA TTTCTTGGTGAATTTCTATGAAGGCCCTCCGTTTAAGTTCAAGCTTTCTCACAGGGATCATTCAAATTTCGTTAACTGTGTGAGGTTTTCCCCTGACGGA AGCAAGTACATTAGTGTTAGTTCTGATAAGAAAGGACTGATATTTGACGGGAAGACTGCTGAAAAGATTGGGGAATTATCTTCAGCTGAGGGTCACAAGG GTAGCATTTATGCTGCTAGCTGGAGTCCTGATAGCAAACAGGTACTTACTGTGTCTGCTGACAAGTCGGCAAAAGTGTGGGAGATCTCCGGCGACGGTAG TGGGACTTTGAAGAAGACTCTGACGTGTGGAGAATCGGGTGGAGTTGATGACATGCTGGTTGGTTGTCTATGGCAGAATGATCATCTTGTCACTGTTTCG CTTGGTGGGATGATTAGTATCTTCTCCGCGAGTGATCTTGAGAAGCGTCCGGTTCAAAGATCTGGACACCTGAAGAATGTTACTTCGTTAGCTGTGCTTA AGAGTGTTCCCAGGACTATACTGTCGAGTAGCTATGATGGTTTGATAATTAAGTGGGTTCAAGGTGCAGGGTACAATGGTAAATTGCGGAGGAAGGAGAA TAGTCAGATCAAATCGTTAGCTGCTATCGATGACGAGATTGTTACCTCCGGATTCGACAACAAGGTATGGAGAGTTCAGTTAAGTGGGGAGCAGTGTGGA GATTCAGATTGCGTTGACATTGGGAGTCAACCAAAGGACTTCAGTCTTGCTCTTAACTGTCCCGAACTAGTTTTGGTCACAATTGATTCTGGCATCGTCA TGCTCCACGGCACGAAAGTAATCTCAACCGTTAATCTTGGGTTTACTGTAACTGCATCCGCAGTTGCACCAGATGGGAGTGAAGTAATCATAGGCGGGCA AGATGGCAAGTTGCATGTCTATTCTATCACAGGCGACACACTTACAGAAGAGGCTGTGCTCCAAAAACACCGTGGTGCCATCACTGTGATTAATTACTCT CCAGATACATCCATGTTTGCATCTGGCGATTCAAATAGAGAAGCTCTGGTATGGGATCGGGTCTCACGAGAGGTGAAGCTTAAGAACATGTTGTACCACA CGGCCCGGATAAACTGCCTTGCTTGGTCTCCTGACAATAGGATGGTCGCTACTGGTTCCCTCGACACGTGCATCATCGTATATGAATTAGACAAGCCGGT TTCTAGTAGGATGACTATTAAGGGAGCTCACCTGGGCGGGGTTTATGGATTAGCATTCGTGGATGAAGATAGTGTCGCAAGTTCTGGAGAAGATGCTTGT GTTCGGGTTTGGAGGTTAACCTCTCAATGA
AA sequence Show only first row Show all	>Lus10038960 pacid=23150261 polypeptide=Lus10038960 locus=Lus10038960.g ID=Lus10038960.BGIv1.0 annot-version=v1.0 MPQLSETYPSAPSTDRGRGILISGHPKTNSILYTNNRSVLILNLDNPLDVSVYGDHAYPATVARFSPNGEWIASADASGTVRIWGAYNDHVLKKEFKVLT GRIDDLQWSSDGMRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPTRPFRIVTCGEDFLVNFYEGPPFKFKLSHRDHSNFVNCVRFSPDG SKYISVSSDKKGLIFDGKTAEKIGELSSAEGHKGSIYAASWSPDSKQVLTVSADKSAKVWEISGDGSGTLKKTLTCGESGGVDDMLVGCLWQNDHLVTVS LGGMISIFSASDLEKRPVQRSGHLKNVTSLAVLKSVPRTILSSSYDGLIIKWVQGAGYNGKLRRKENSQIKSLAAIDDEIVTSGFDNKVWRVQLSGEQCG DSDCVDIGSQPKDFSLALNCPELVLVTIDSGIVMLHGTKVISTVNLGFTVTASAVAPDGSEVIIGGQDGKLHVYSITGDTLTEEAVLQKHRGAITVINYS PDTSMFASGDSNREALVWDRVSREVKLKNMLYHTARINCLAWSPDNRMVATGSLDTCIIVYELDKPVSSRMTIKGAHLGGVYGLAFVDEDSVASSGEDAC VRVWRLTSQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18060			transducin family protein / WD...		Lus10038960 [exp]	0	1
AT3G18060			transducin family protein / WD...		Lus10027252 [exp]	1.0	0.8879
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Lus10006783 [exp]	1.4	0.8717
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10037242 [exp]	6.2	0.8351
AT3G04830			Protein prenylyltransferase su...		Lus10020242 [exp]	6.4	0.8037
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10035656 [exp]	8.1	0.8204
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10042844 [exp]	8.4	0.8529
AT2G46710			Rho GTPase activating protein ...		Lus10005998 [exp]	9.4	0.8520
AT5G19130			GPI transamidase component fam...		Lus10014561 [exp]	10.8	0.8507
AT5G11710			ENTH/VHS family protein (.1)		Lus10007460 [exp]	12.0	0.8564
AT4G30920		AtLAP2, LAP2	leucyl aminopeptidase 2, Cytos...		Lus10036266 [exp]	13.1	0.7842

Compare expression of checked genes

Lus10038960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.