Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18050 274 / 1e-90 unknown protein AT4G28100 197 / 6e-61 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027253 [exp] 495 / 7e-178 AT3G18050 306 / 2e-103 unknown protein Lus10039742 [exp] 196 / 3e-60 AT4G28100 399 / 2e-140 unknown protein Lus10018524 [exp] 195 / 4e-60 AT4G28100 397 / 1e-139 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G040900 [exp] 336 / 7e-115 AT3G18050 347 / 2e-119 unknown protein Potri.012G049000 [exp] 333 / 8e-114 AT3G18050 352 / 2e-121 unknown protein Potri.019G118300 [exp] 198 / 3e-61 AT4G28100 408 / 5e-144 unknown protein Potri.013G148700 [exp] 198 / 3e-61 AT4G28100 377 / 8e-132 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038961 pacid=23150468 polypeptide=Lus10038961 locus=Lus10038961.g ID=Lus10038961.BGIv1.0 annot-version=v1.0 ATGGCGATCCCCAGTCTCCTCCTCCACCTCCTCCTCCTCCCACTCATAATCTCAGCCTTACCCGCACCCGACCCGGAAACCATCCAACAGCTCCTCCCAA CCCACTCCCCACCTTCCACCATCCCAGCATTCCCCGAACAATCCAACCTCCAATCCTGCCCTCTCCACCTCCCGCCGGCCCTTTTCCCCGGCGTCAAATC CGCCTGCTCCGGCGCCGGAGGAGCCTCTGCCGCCCTCCACAGGACACGATGTTGCCCTGTTCTCGCAGCGTGGCTGTACTCTGCTTACTCTGCCACCGCA CTATCCAGACCCAACCGGATCGATCCGGCCGGAAACCGGACCAAATACGACATGCCGCTGCTCCCCGACGACTCGGAGGACTGCGTGGACTCACTGGAGA AGGGGTTGACGGAGAAAGGAATTCAGCTTCCTAAACCTAACGAGACGTGCGATGCCGTTTACTGCTACTGTGGCATTCGGCTCCACCGGTTCACCTGCCC GGCGGCATTCTCGGTGGATGGAGGGAATCTCGTCGGCGATCGGCGCGTGAGGAGGCTGGAGAAGGATTGCTTCAGCTCGTCTAGTGGGTTTTCTTCGTCT GGGATTGGGGGCTGCTCCAAGTGCTTGAACACGCTCAATTCGCTGAACCGCAATCACAATAAGGAAGCTTGGAACTCAAGCAACCCCGACGAGAGGACCA CCAAGATGCAGAACAAGGACTGCCAGCTAATGGGCCTCACATGGCTCCTCGCCAAGAACCGCACTGCCTACATTCACACCGTCTCCGCCGTCCTCCGAGC GATCATGTTGCATGACGACCGAGGCCTCTCGGAGCCCCGGTCGTGTTCGGTCAACAGCGATGGGATGCCTCTGGCTGTTGATTCGTCCGAGATTCAGAGC GGTTCGTGGTCGATTAATGCTCGTCGAAGAGCCAATGTGTTGTTGTTAGTTGTTGGCCTTCTTTGTTTGTTGAGTATGGTAGTTGTTTTGTAA
AA sequence Show only first row Show all	>Lus10038961 pacid=23150468 polypeptide=Lus10038961 locus=Lus10038961.g ID=Lus10038961.BGIv1.0 annot-version=v1.0 MAIPSLLLHLLLLPLIISALPAPDPETIQQLLPTHSPPSTIPAFPEQSNLQSCPLHLPPALFPGVKSACSGAGGASAALHRTRCCPVLAAWLYSAYSATA LSRPNRIDPAGNRTKYDMPLLPDDSEDCVDSLEKGLTEKGIQLPKPNETCDAVYCYCGIRLHRFTCPAAFSVDGGNLVGDRRVRRLEKDCFSSSSGFSSS GIGGCSKCLNTLNSLNRNHNKEAWNSSNPDERTTKMQNKDCQLMGLTWLLAKNRTAYIHTVSAVLRAIMLHDDRGLSEPRSCSVNSDGMPLAVDSSEIQS GSWSINARRRANVLLLVVGLLCLLSMVVVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18050			unknown protein		Lus10038961 [exp]	0	1
AT3G18050			unknown protein		Lus10027253 [exp]	1.0	0.9103
AT5G25510			Protein phosphatase 2A regulat...		Lus10033069 [exp]	4.9	0.8169
AT2G41990			unknown protein		Lus10003341 [exp]	7.7	0.8065
AT4G35320			unknown protein		Lus10013844 [exp]	9.0	0.7921
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007658 [exp]	10.0	0.8107
AT3G12610		DRT100	DNA-DAMAGE REPAIR/TOLERATION 1...		Lus10037705 [exp]	10.4	0.8202
AT4G33625			unknown protein		Lus10007070 [exp]	12.4	0.8040
AT1G75420			UDP-Glycosyltransferase superf...		Lus10024281 [exp]	13.0	0.7629
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10006475 [exp]	14.9	0.7866
AT5G62890			Xanthine/uracil permease famil...		Lus10042138 [exp]	15.9	0.7882

Compare expression of checked genes

Lus10038961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.