Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18490 322 / 9e-111 Protein of unknown function (DUF1637) (.1) AT5G39890 207 / 7e-66 Protein of unknown function (DUF1637) (.1) AT5G15120 182 / 4e-56 Protein of unknown function (DUF1637) (.1) AT2G42670 174 / 2e-53 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2) AT3G58670 170 / 1e-51 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027254 [exp] 525 / 0 AT1G18490 324 / 1e-111 Protein of unknown function (DUF1637) (.1) Lus10015360 [exp] 207 / 4e-65 AT5G39890 316 / 6e-108 Protein of unknown function (DUF1637) (.1) Lus10020711 [exp] 194 / 4e-61 AT3G58670 386 / 8e-138 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10017645 [exp] 190 / 1e-59 AT3G58670 390 / 2e-139 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10033603 [exp] 185 / 1e-57 AT3G58670 385 / 3e-137 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10029828 [exp] 179 / 5e-53 AT3G58670 322 / 4e-109 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10003861 [exp] 174 / 2e-52 AT5G39890 229 / 4e-74 Protein of unknown function (DUF1637) (.1) Lus10013620 [exp] 171 / 2e-51 AT5G39890 225 / 7e-73 Protein of unknown function (DUF1637) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G055600 [exp] 372 / 2e-130 AT1G18490 341 / 2e-118 Protein of unknown function (DUF1637) (.1) Potri.012G057400 [exp] 353 / 3e-123 AT1G18490 329 / 3e-114 Protein of unknown function (DUF1637) (.1) Potri.004G129400 [exp] 210 / 1e-66 AT5G39890 338 / 1e-117 Protein of unknown function (DUF1637) (.1) Potri.013G064200 [exp] 200 / 4e-63 AT5G15120 238 / 4e-78 Protein of unknown function (DUF1637) (.1) Potri.019G038851 [exp] 198 / 4e-62 AT5G39890 225 / 6e-73 Protein of unknown function (DUF1637) (.1) Potri.017G079400 [exp] 197 / 5e-62 AT5G39890 300 / 4e-103 Protein of unknown function (DUF1637) (.1) Potri.004G058000 [exp] 191 / 4e-60 AT3G58670 320 / 1e-111 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Potri.011G067300 [exp] 191 / 1e-59 AT2G42670 316 / 8e-110 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF07847 [flax] [poplar] PCO_ADO PCO_ADO
Representative CDS sequence Show only first row Show all	>Lus10038962 pacid=23150423 polypeptide=Lus10038962 locus=Lus10038962.g ID=Lus10038962.BGIv1.0 annot-version=v1.0 ATGTTGTCAAAAATCCAGATTGCAGCAGATAAATCCAGAAATCTGATTTGGGCATCGCCTATATCTCACTGTTTCACTGCAAGGAGGAGGAAAAGCAGCA GTAGAATCAACATGATGATGAACCAGTCGTCCTCTAAAGTTCAGTCTCTTTACCAGCTCTGCAAGTCCACTCTTTCTCCTCCGTCGTCCGCCGCCGCCGC CGTTCCTCCGTCGTCCCCCGCCGTCCAGAAAATCTGCTCTCTTCTGGATTCAATTGGCCCTGATGATGTGGGGCTTAGAGAGGAAACTTCAGATGATGAT CGAGGGCATGGCATTTTCGGGCTTCAACGTCGGAGTCGAGTTGCTCGATGGTCTCAACCGATAACGTACATAGACGTTTATGAATGCGATAGTTTTACGA TGTGTATATTCTGTTTTCCGACTTCATCGGTTATCCCGCTTCATGACCACCCGGGCATGACAGTCTTCAGCAAAGTTCTGTATGGATCTCTTCATGTTAA AGCTTATGACTGGGTTGAGCCAGCCTGCATCTCTGAAAGCAAGGAGCTTGGTGTACCTTCAGCAAGGCTAGCGAAGTTTACTGTCGACAAAGTTCTCGCC GCTCCCTGCGGAACATCGGTCTTGTATCCCAATGCCGGAGGGAATCTGCATTGCTTCACTGCGTTGACCCCTTGTGCGGTCCTCGATATTCTCACGCCTT CGTACAACGAACACGCTGGAAGGATGTGTACTTATTACCATGACTACCCGGAGTCCACATTTTCAATAAGCGGAGCTGCAGTGAAAGACAGAGGAGCGGA GGATTATGCGTGGTTAGCTGAGATCGAAACGCCAGATGATCTTCATATGCGTTCAGGTCGATATACCGGCCCTTCTATTCATCTGTAG
AA sequence Show only first row Show all	>Lus10038962 pacid=23150423 polypeptide=Lus10038962 locus=Lus10038962.g ID=Lus10038962.BGIv1.0 annot-version=v1.0 MLSKIQIAADKSRNLIWASPISHCFTARRRKSSSRINMMMNQSSSKVQSLYQLCKSTLSPPSSAAAAVPPSSPAVQKICSLLDSIGPDDVGLREETSDDD RGHGIFGLQRRSRVARWSQPITYIDVYECDSFTMCIFCFPTSSVIPLHDHPGMTVFSKVLYGSLHVKAYDWVEPACISESKELGVPSARLAKFTVDKVLA APCGTSVLYPNAGGNLHCFTALTPCAVLDILTPSYNEHAGRMCTYYHDYPESTFSISGAAVKDRGAEDYAWLAEIETPDDLHMRSGRYTGPSIHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18490			Protein of unknown function (D...		Lus10038962 [exp]	0	1
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10043199 [exp]	1.7	0.8419
AT2G11890			adenylate cyclases (.1.2)		Lus10024472 [exp]	2.8	0.8166
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Lus10005045 [exp]	13.4	0.7640
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10005111 [exp]	13.5	0.7593
AT3G57120			Protein kinase superfamily pro...		Lus10016113 [exp]	13.9	0.7461
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10000655 [exp]	20.1	0.7485
AT2G30620			winged-helix DNA-binding trans...		Lus10005535 [exp]	25.6	0.7729
AT1G21080			DNAJ heat shock N-terminal dom...		Lus10030713 [exp]	26.5	0.7478
AT3G58690			Protein kinase superfamily pro...		Lus10033606 [exp]	33.7	0.7539
AT3G26990			ENTH/VHS family protein (.1)		Lus10032013 [exp]	33.7	0.7523

Compare expression of checked genes

Lus10038962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.