Plant FIBer expression Database

Lus10038964 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G28050 194 / 6e-61 TET7 tetraspanin7 (.1)
AT2G23810 184 / 5e-57 TET8 tetraspanin8 (.1)
AT1G18520 176 / 6e-54 TET11 tetraspanin11 (.1)
AT4G30430 173 / 2e-52 TET9 tetraspanin9 (.1)
AT3G12090 153 / 1e-44 TET6 tetraspanin6 (.1)
AT5G23030 147 / 1e-42 TET12 tetraspanin12 (.1)
AT3G45600 147 / 2e-42 TET3 tetraspanin3 (.1)
AT4G23410 145 / 1e-41 TET5 tetraspanin5 (.1)
AT1G63260 140 / 6e-40 TET10 tetraspanin10 (.1.2.3)
AT5G60220 134 / 6e-37 TET4 tetraspanin4 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027256
[exp]
385 / 5e-136 AT2G23810 150 / 2e-44 tetraspanin8 (.1)
Lus10008891
[exp]
205 / 6e-65 AT2G23810 377 / 5e-133 tetraspanin8 (.1)
Lus10023216
[exp]
201 / 2e-63 AT2G23810 376 / 1e-132 tetraspanin8 (.1)
Lus10019965
[exp]
192 / 4e-60 AT2G23810 376 / 1e-132 tetraspanin8 (.1)
Lus10015494
[exp]
187 / 8e-58 AT2G23810 370 / 2e-130 tetraspanin8 (.1)
Lus10000869
[exp]
151 / 4e-44 AT1G18520 218 / 2e-70 tetraspanin11 (.1)
Lus10009607
[exp]
148 / 6e-43 AT1G18520 217 / 5e-70 tetraspanin11 (.1)
Lus10038473
[exp]
143 / 8e-41 AT3G45600 446 / 9e-160 tetraspanin3 (.1)
Lus10008563
[exp]
142 / 1e-40 AT2G19580 411 / 1e-146 tetraspanin2 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G055700
[exp]
204 / 8e-65 AT1G18520 196 / 6e-62 tetraspanin11 (.1)
Potri.018G099800
[exp]
201 / 1e-63 AT2G23810 322 / 3e-111 tetraspanin8 (.1)
Potri.006G177900
[exp]
197 / 7e-62 AT2G23810 317 / 4e-109 tetraspanin8 (.1)
Potri.008G041600
[exp]
175 / 3e-53 AT3G12090 397 / 2e-140 tetraspanin6 (.1)
Potri.010G220300
[exp]
172 / 3e-52 AT3G12090 399 / 2e-141 tetraspanin6 (.1)
Potri.009G015100
[exp]
155 / 9e-46 AT3G45600 388 / 7e-137 tetraspanin3 (.1)
Potri.015G055900
[exp]
140 / 3e-40 AT1G18520 163 / 3e-49 tetraspanin11 (.1)
Potri.001G107200
[exp]
137 / 5e-39 AT1G63260 416 / 1e-148 tetraspanin10 (.1.2.3)
Potri.006G150400
[exp]
129 / 7e-36 AT2G19580 367 / 5e-129 tetraspanin2 (.1)
Potri.003G093000
[exp]
129 / 1e-35 AT5G46700 369 / 4e-130 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0347 Tetraspannin PF00335 Tetraspanin Tetraspanin family
Representative CDS sequence
>Lus10038964 pacid=23150599 polypeptide=Lus10038964 locus=Lus10038964.g ID=Lus10038964.BGIv1.0 annot-version=v1.0
ATGATCCTCGGAGCCGCCGCAATAGCGACATCGGGGATCATGCAAATAACTGAATACAATTCCGAGTGCCACAAGTTTCTGGAGACTCCATTGTTGATCA
TGGGTTGTTTTCTAGTCTTCATTTCGATGCTCGGCTTCATCGGTTCATGTTGCAACCAAAAATCCATATTGTGGATGTACTCGTTTGTGTCGTTCTGTAT
GGTATTGGCCGCATTGGGTTTCATCGCCTTTACGTTCATCGTCACCAATGTGACCGCCGGAAAAGTGCTCTCCGGAGCCGGATACGATAAATACCGGTTG
GGGGATTACTCGAATTGGTTGAGAGAACATTTTGCTGATGCAAACCATTGGAGAAAGATCAAGAGTTGTTTAATTGAGGCCGATGTTTGTGACAAATTTG
ATCCTCATGAGAAGTCATTGCCCATTATACAGACCGCATGCTGCAAGCCGCCGAAAGACTGCAGGTTTGTCGAATCAGGGAACGGACGGTGGGTGATGCC
ACAAACCAAACTGCAACGACCATCATCGTCAGCCAATGCCAAGGACATAGACTGCACGAAATGGAACAACGACCCGAAGAAGAGGTGCTTCGACTGCGAA
TCGTGCAAAGGCGGCGCGTTGGATCACATCAGGAAAGACTGGAAGACATTAGCCCACATCAACATGTGTCTTCTTCTGCTCCTTGTGCTGATTTACTCTG
TTAGTTGCTGTGCAAGGAGAGGGATCCAGCCTAGTACCAAGAACTACAAAGGTAGGGAATTCGAAGAAGTGTTGTTTCTCGATTTTGTATTGTCGTCCGA
GGGTGATCACCCTCGTTCCAATGACTATTCCGTTTGGGGCGAACGACTAGATATAAGATGTTTCTTTACACTTCCGTTGTAA
AA sequence
>Lus10038964 pacid=23150599 polypeptide=Lus10038964 locus=Lus10038964.g ID=Lus10038964.BGIv1.0 annot-version=v1.0
MILGAAAIATSGIMQITEYNSECHKFLETPLLIMGCFLVFISMLGFIGSCCNQKSILWMYSFVSFCMVLAALGFIAFTFIVTNVTAGKVLSGAGYDKYRL
GDYSNWLREHFADANHWRKIKSCLIEADVCDKFDPHEKSLPIIQTACCKPPKDCRFVESGNGRWVMPQTKLQRPSSSANAKDIDCTKWNNDPKKRCFDCE
SCKGGALDHIRKDWKTLAHINMCLLLLLVLIYSVSCCARRGIQPSTKNYKGREFEEVLFLDFVLSSEGDHPRSNDYSVWGERLDIRCFFTLPL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G28050 TET7 tetraspanin7 (.1) Lus10038964
[exp]
0 1
AT5G63800 MUM2, BGAL6 MUCILAGE-MODIFIED 2, beta-gala... Lus10033500
[exp]
6.8 0.8494
AT3G23730 XTH16 xyloglucan endotransglucosylas... Lus10011983
[exp]
8.7 0.8532
AT1G01470 LSR3, LEA14 LIGHT STRESS-REGULATED 3, LATE... Lus10010140
[exp]
9.3 0.8989
Lus10039759
[exp]
10.2 0.8862
AT1G29670 GDSL-like Lipase/Acylhydrolase... Lus10029280
[exp]
12.0 0.8875
AT4G30440 GAE1 UDP-D-glucuronate 4-epimerase ... Lus10002511
[exp]
15.1 0.8244
AT1G06410 ATTPSA, ATTPS7 TREHALOSE -6-PHOSPHATASE SYNTH... Lus10029821
[exp]
16.1 0.8784
Lus10036058
[exp]
16.4 0.8278
AT3G61220 SDR1 short-chain dehydrogenase/redu... Lus10009824
[exp]
16.5 0.8653
AT5G33340 CDR1 CONSTITUTIVE DISEASE RESISTANC... Lus10024910
[exp]
22.7 0.8685

Lus10038964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.