Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23040 331 / 4e-115 CDF1 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) AT3G51140 117 / 2e-31 Protein of unknown function (DUF3353) (.1) AT2G20920 50 / 4e-07 Protein of unknown function (DUF3353) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027257 [exp] 437 / 2e-147 AT5G23050 1044 / 0.0 acyl-activating enzyme 17 (.1) Lus10000868 [exp] 358 / 1e-125 AT5G23040 359 / 3e-126 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Lus10009608 [exp] 322 / 2e-112 AT5G23040 333 / 3e-117 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Lus10041816 [exp] 126 / 3e-34 AT3G51140 328 / 3e-112 Protein of unknown function (DUF3353) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G057700 [exp] 333 / 5e-116 AT5G23040 316 / 3e-109 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Potri.007G015600 [exp] 131 / 1e-36 AT3G51140 331 / 1e-114 Protein of unknown function (DUF3353) (.1) Potri.004G177300 [exp] 53 / 4e-08 AT2G20920 306 / 2e-104 Protein of unknown function (DUF3353) (.1) Potri.009G137600 [exp] 53 / 7e-08 AT2G20920 301 / 2e-102 Protein of unknown function (DUF3353) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11833 [flax] [poplar] CPP1-like Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Representative CDS sequence Show only first row Show all	>Lus10038965 pacid=23150690 polypeptide=Lus10038965 locus=Lus10038965.g ID=Lus10038965.BGIv1.0 annot-version=v1.0 ATGACTTCCCTCCTTCTCTCCAACCCCAATCTATCCTCCCCCTTCCTCCCCCGAACCCTCGATAAACGTCTACAGCAGAAGCAGACGGTGGCGAGTCTGT CTTACAATCCGCTTCAGAAGTCATCCAGAAGCCGTACGTTCGTCAAATGCTCGTACGACATTCCTTACGAAGCTTACGAAGGCAACATACCTACGTTCAA CCGGACGAGTGTTTGGGATCCGTACAAGCGGCTAGGAGTGAGTCAAGATGCTTCGGAGGACGAGGTTTGGAGCGCTCGTAATTTTCTGCTGGAGCAGTAT GCGGGGCACGAGAGGAGTGAAGAGTCTGTGGAAGGTGCTTTCGAGAAGCTTCTGATGACGAGCTTTAAGCAACGTAAGAAGACGAAGATTAATTTGAAGA CCAAGTTGAAGAAGCAGGTGGACGAGTCTCCAGCTTGGGTGAAGAGCTTGGTCAGCTTTGTGGAAATCCCTCCAATGGATATCATCTTCAGGAGGCTGTT CCTTTTCGCGTTCATGGGCGGCTGGAGCATCATGAATTCCGCAGATGGTGGACCGGCTTTCCAGGTTGCAGTATCATTGGCAGCCTGCGTATATTTCCTC AACGAGAAGACTAAGAGTCTCGGCAGAGCTTTTGTCATCGGCCTTGGAGCTCTGGCAACTGGATGGATATGCGGTGCCATAACGGTCCCCATGATTCCAG CAGTCCTGATACACCCTAGTTGGACGCTGGAGCTCATGACCTCGTTGGTAGCTTACTGTTTCCTCTTCCTTGGCTGTACTTTCCTCAAATGA
AA sequence Show only first row Show all	>Lus10038965 pacid=23150690 polypeptide=Lus10038965 locus=Lus10038965.g ID=Lus10038965.BGIv1.0 annot-version=v1.0 MTSLLLSNPNLSSPFLPRTLDKRLQQKQTVASLSYNPLQKSSRSRTFVKCSYDIPYEAYEGNIPTFNRTSVWDPYKRLGVSQDASEDEVWSARNFLLEQY AGHERSEESVEGAFEKLLMTSFKQRKKTKINLKTKLKKQVDESPAWVKSLVSFVEIPPMDIIFRRLFLFAFMGGWSIMNSADGGPAFQVAVSLAACVYFL NEKTKSLGRAFVIGLGALATGWICGAITVPMIPAVLIHPSWTLELMTSLVAYCFLFLGCTFLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10038965 [exp]	0	1
AT3G59040			Tetratricopeptide repeat (TPR)...		Lus10005058 [exp]	3.5	0.7451
AT4G04614			unknown protein		Lus10014685 [exp]	4.8	0.7689
AT5G03230			Protein of unknown function, D...		Lus10019936 [exp]	4.9	0.7349
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10008652 [exp]	10.8	0.7527
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10005095 [exp]	11.7	0.6469
AT3G54826			Zim17-type zinc finger protein...		Lus10037983 [exp]	14.7	0.6801
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10003772 [exp]	23.4	0.7583
AT5G15220			Ribosomal protein L27 family p...		Lus10010822 [exp]	31.5	0.6581
AT5G46160			Ribosomal protein L14p/L23e fa...		Lus10023296 [exp]	33.7	0.7076
AT1G27350			Ribosome associated membrane p...		Lus10037031 [exp]	34.0	0.7005

Compare expression of checked genes

Lus10038965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.