Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23050 1003 / 0 AAE17 acyl-activating enzyme 17 (.1) AT1G55320 657 / 0 AAE18 acyl-activating enzyme 18 (.1.2) AT5G36880 135 / 7e-33 ACS acetyl-CoA synthetase (.1.2) AT4G05160 62 / 1e-09 AMP-dependent synthetase and ligase family protein (.1) AT1G65060 60 / 4e-09 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT3G21240 53 / 5e-07 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT3G48990 48 / 3e-05 AMP-dependent synthetase and ligase family protein (.1) AT2G47240 45 / 0.0002 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT3G16910 45 / 0.0003 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) AT5G63380 43 / 0.0007 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027257 [exp] 1371 / 0 AT5G23050 1044 / 0.0 acyl-activating enzyme 17 (.1) Lus10012931 [exp] 682 / 0 AT1G55320 1008 / 0.0 acyl-activating enzyme 18 (.1.2) Lus10034997 [exp] 670 / 0 AT1G55320 1003 / 0.0 acyl-activating enzyme 18 (.1.2) Lus10041499 [exp] 151 / 7e-38 AT5G36880 1241 / 0.0 acetyl-CoA synthetase (.1.2) Lus10012595 [exp] 150 / 1e-37 AT5G36880 1246 / 0.0 acetyl-CoA synthetase (.1.2) Lus10008677 [exp] 55 / 2e-07 AT1G51680 834 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10026143 [exp] 54 / 4e-07 AT1G51680 838 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10013831 [exp] 53 / 9e-07 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10005390 [exp] 50 / 5e-06 AT1G51680 827 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G056000 [exp] 1133 / 0 AT5G23050 1054 / 0.0 acyl-activating enzyme 17 (.1) Potri.001G006700 [exp] 662 / 0 AT1G55320 1078 / 0.0 acyl-activating enzyme 18 (.1.2) Potri.001G006600 [exp] 650 / 0 AT1G55320 1041 / 0.0 acyl-activating enzyme 18 (.1.2) Potri.014G140900 [exp] 151 / 6e-38 AT5G36880 1191 / 0.0 acetyl-CoA synthetase (.1.2) Potri.017G112800 [exp] 66 / 8e-11 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G144700 [exp] 64 / 3e-10 AT3G48990 776 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 59 / 6e-09 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G095000 [exp] 50 / 7e-06 AT5G63380 615 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G138451 [exp] 48 / 2e-05 AT1G65880 730 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.001G105900 [exp] 48 / 3e-05 AT3G48990 750 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10038966 pacid=23150335 polypeptide=Lus10038966 locus=Lus10038966.g ID=Lus10038966.BGIv1.0 annot-version=v1.0 ATGGTTTACAAATCACTGGATTTCATCTCCGTCTCCGATATCCAAGCTCTGGGAATCGGACCGCCGCTATCCGAAAAACTCCACTCTGACCTCGCCGAAA TCCTCCGGAGTCACGGCGCCGGCGGCGATGCGACGACGTGGACTGACATCTGCGGTAGACTGCTCGATCCTAGCCTTCCTTTCTCCTTCCACCAGATGAT GTACTATGGCTGCTTCGTCGACTTCGGACCCGACCCGCCCGCTTGGTCCCCCGACCCGAAAAGTGCAATCATGACTAATGTGGGTCATCTCTTAGAGAGA CGAGGGGAGGAGTTTCTAGGATCAAAGTTCAAGGATCCCATTTCAAGTTTTGCCGACTTCCAGGAGTTCTCAGTCTCAAACCCGGAAGTTTACTGGAAGA CGGTGTTTGATGAAATGGAAATTATTTTCTCAGTTCATCCGGAATGTATTCTACGTGAAGATTCGTCACATGAGAGCCCCACGGTAAACCCCGGGGGTGA ATGGCTACCTGGAGCGAATCTCAACCCTGCAAAAAGCTGTTTGAGTTGCAATAGGAAGAGAACTTTGGATGATGTAGTGTTGAGATGGCGTGACGAAGGA AATGATGATATTCCTGTGTGCAGCATGACCCTTGAGGAGTTGCGTCAAGAAGTCTGGTTAGTCGCACATGCACTTGATGAGCTGGGTTTGGAGAAAGGAT CTGCCATTGCTATTGATATGCCAATGAACGTCAAGTCTGTGGTTGTGTACTTGGCTATTGTTCTGGCAGGATATGTAGTTGTGTCCATTGCCGATAGCTT TGCATCGACAGAAATATCAACCAGACTTAAAATATCTCAAGCAAAAGCCATATTTACACAGGACCTTATTATTCGGGGTGACAAAAGTATTCCCTTGTAC AGTAGAGTTGTGGATGCACAAGCACCCATGGCTATCATTATTCCTGCTACCAAAGACTCGAGCTTCAGTATGAAGTTGCGCGATGGTGATGTTTCTTGGC ATTATTTTCTGGAAAGAGTAAAAGATTTCAGTGGAAATGAATATACTGCTGTTGAACAACCAGTTGGTGCATTTACAAATATTCTCTTTTCTTCTGGCAC AACAGGTGAGCCGAAGGCAATTCCATGGACCCAAGCAACTCCGCTGAAATCTGCAGCCGATGCATGGTGTCACATGGATATCCGCAAAGGAGACGTCGTT GCTTGGCCCACTAACCTTGGTTGGATGATGGGTCCCTGGCTAGTGTACGCTTCTTTGTTGAATGGAGCTTCAATTGCTCTGTATAATGGATCACCACTAG GTTCTTCCTTTGCCAAATTTGTACAGGATGCTAGAGTAACAATGCTAGGAGTTATCCCCAGTATCGTTAGGGTATGGAAAAGCTCGAATGTTACAGCCGG TTATGATTGGTCTTCTATCCGCTGCTTTGGCTCGACCGGTGAAGCATCGAGTGTTGACGAGTACTTATGGCTGATGGGGAGAGCAAAATACAAACCCGTC ATGGAATATTGTGGCGGCACAGAGATCGGTGGTGGTTTCGTTACAGGATCCATGTTGCAGCCACAGTCATTGGCTGGTTTCAGCACTCCAGCAATGGGCT GCAAATTATACATTCTGGACGACAATGGTCTCCCTATACCACAGGATGCAGCTGGAATCGGTGAGCTAGCTCTCGGTTCTCTCATGTTTGGAGCTTCGAG CACGCTGTTGAATGCTGACCATTACAGCGTGTATTTCAAGGGAATGCCTTTATCCGACGGAAAGGTCCTTCGGAGGCATGGTGACTTTTTTGAGCGCACA TCAAGAGGATACTACCGTGCACATGGTCGCGCAGACGATACAATGAATCTCGGAGGTATCAAGGTTAGCTCGGTGGAAATCGAGCGCATTTGTAATGCAG CGGACGACCGTGTGCTAGAGACAGCTGCGATCGGGGTGCCGCCTCTAGAAGGCGGTCCGGAACGGTTGACCATCGCTGTTGTAGTCAACAACCCGGATGA TCCATTAGACTTGGATCAGCTGAAGAAGTTGTTCAATCTGGCGGTGCAGAAGAACCTCAACCCGTTGTTCCGGGTTCATCAGGTGGTCTTGGTCACTTCG CTCCCGAGAACCGCAACCAACAAGGTTATGAGAAGGGTTCTACGGCAGCAGTTCACTGCTCAACAGGACCGGAACCCTAAACTGTGA
AA sequence Show only first row Show all	>Lus10038966 pacid=23150335 polypeptide=Lus10038966 locus=Lus10038966.g ID=Lus10038966.BGIv1.0 annot-version=v1.0 MVYKSLDFISVSDIQALGIGPPLSEKLHSDLAEILRSHGAGGDATTWTDICGRLLDPSLPFSFHQMMYYGCFVDFGPDPPAWSPDPKSAIMTNVGHLLER RGEEFLGSKFKDPISSFADFQEFSVSNPEVYWKTVFDEMEIIFSVHPECILREDSSHESPTVNPGGEWLPGANLNPAKSCLSCNRKRTLDDVVLRWRDEG NDDIPVCSMTLEELRQEVWLVAHALDELGLEKGSAIAIDMPMNVKSVVVYLAIVLAGYVVVSIADSFASTEISTRLKISQAKAIFTQDLIIRGDKSIPLY SRVVDAQAPMAIIIPATKDSSFSMKLRDGDVSWHYFLERVKDFSGNEYTAVEQPVGAFTNILFSSGTTGEPKAIPWTQATPLKSAADAWCHMDIRKGDVV AWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSSFAKFVQDARVTMLGVIPSIVRVWKSSNVTAGYDWSSIRCFGSTGEASSVDEYLWLMGRAKYKPV MEYCGGTEIGGGFVTGSMLQPQSLAGFSTPAMGCKLYILDDNGLPIPQDAAGIGELALGSLMFGASSTLLNADHYSVYFKGMPLSDGKVLRRHGDFFERT SRGYYRAHGRADDTMNLGGIKVSSVEIERICNAADDRVLETAAIGVPPLEGGPERLTIAVVVNNPDDPLDLDQLKKLFNLAVQKNLNPLFRVHQVVLVTS LPRTATNKVMRRVLRQQFTAQQDRNPKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23050		AAE17	acyl-activating enzyme 17 (.1)		Lus10038966 [exp]	0	1
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10041544 [exp]	3.7	0.9362
AT3G15290			3-hydroxyacyl-CoA dehydrogenas...		Lus10020828 [exp]	4.6	0.9553
AT4G28240			Wound-responsive family protei...		Lus10039758 [exp]	8.1	0.9445
AT2G24550			unknown protein		Lus10026939 [exp]	10.0	0.9429
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10018541 [exp]	11.8	0.9290
AT5G41650			Lactoylglutathione lyase / gly...		Lus10032333 [exp]	14.8	0.8909
AT1G13195			RING/U-box superfamily protein...		Lus10006253 [exp]	16.8	0.9429
AT2G17020			F-box/RNI-like superfamily pro...		Lus10025093 [exp]	19.2	0.9267
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10018383 [exp]	19.5	0.9397
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10015824 [exp]	25.6	0.9386

Compare expression of checked genes

Lus10038966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.