Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04040 1156 / 0 SDP1 SUGAR-DEPENDENT1, Patatin-like phospholipase family protein (.1) AT3G57140 1056 / 0 SDP1-LIKE sugar-dependent 1-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027259 [exp] 1416 / 0 AT5G04040 1168 / 0.0 SUGAR-DEPENDENT1, Patatin-like phospholipase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G043800 [exp] 1221 / 0 AT5G04040 1205 / 0.0 SUGAR-DEPENDENT1, Patatin-like phospholipase family protein (.1) Potri.016G041000 [exp] 1189 / 0 AT5G04040 1176 / 0.0 SUGAR-DEPENDENT1, Patatin-like phospholipase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [flax] [poplar] Patatin PF01734 [flax] [poplar] Patatin Patatin-like phospholipase CL0323 [flax] [poplar] PF11815 [flax] [poplar] DUF3336 Domain of unknown function (DUF3336)
Representative CDS sequence Show only first row Show all	>Lus10038968 pacid=23150579 polypeptide=Lus10038968 locus=Lus10038968.g ID=Lus10038968.BGIv1.0 annot-version=v1.0 ATGGATATAAGTAATGAGGCCACGGTTGATCTTTTCCCAATTGGACCGTCGTCCATCCTTGGGAGGACCATTGCTTTCAAGGTCTTATTCTGCAAGTCAA TGGGCAGCTTGAGGCATCAAATTTTCCAGCTGCTGTTGAGATACATCTATAGATTTAAGGCATTTCTGGGACCTATGTTGTCTTGGTTACATCCTAGGAA CCCACAGTGGATATTGGCTATGGTGACAGTGATAGCCTTTCTGTTGAAGCGACACACGAGTCTTAAAACCAAGGCCGAGATGGCCTACCGGAGGAAATTC TGGAGGAATATGATGAGAGCTGCTTTGACATATGAGGAGTGGGCTCATGCTGCTAAGATGCTTGATAAAGAGACCCCGAAGCTCAATGAGTCCGACTTTT ATGACGAAGAGTTAGTTAGGAACAAGCTTCAAGAGCTGCACCACCGGCGTCAGGAAGGATCGCTGAGGGATATCATGTTCTTTATGAGAGCTGATCTCAT ACGGAACCTTGGCAACATGTGTAATCCAGAGCTTCACAAGGGAAGACTTCATGTTCCTAGGCTGATAAAGGATTATATTGACGAGGTATCAACTCAGTTG AGAATGGTCTGTGACTCGGATTCGGAAGAGCTTTCTCTCGAGGAAAAGCTATCTTTTATGCATGAAACTAGGCATGCCTTTGGAAGGACAGCTTTGCTTT TGAGTGGAGGTGCTTCCCTTGGAGCCTTTCATGGAGGTGTTGTTAAAACACTGGTGGAACATAAGCTCTTGCCGAGGATAATTGCGGGTTCTAGCGTGGG ATCCATTATGTGTTCAGTGGTGGCCACTAGGTCCTGGCCAGAGTTGCAAAGCTTTTTCGAGGATTCTTTGCAGTCTTTACAGTTTTTTGACCAGTTGGGA GGGATTTTTTCTATTGTGAAGAGAGTCATGATCCAGGGTGCTGTTCATGATATCCGGCAGTTGCAATGGATGTTAAGGAATCTAACGAGCAACTTAACAT TTCAAGAAGCATTTGATATGACTGGTCGAATTCTTGGGATTACAGTTTGCTCCCCTAGGAAGCATGAACCGCCAAGATGCCTCAACTACCTAAACTCCCC TCATGTTGTCATATGGAGCGCTGTGACCGCTTCTTGTGCTTTTCCTGGCCTTTTCGAGGCTCAGGAATTGATGGCAAAGGACAGGAGTGGCGAAATTGTT CCTTATCATCCACCATTTAATCTCGCTCCGGAGGAGGGGTCAGGTACGTCTACACGTCGATGGAGGGATGGTAGCTTGGAGATTGATTTACCAATGATGC AGTTGAAGGAACTATTCAATGTTAATCATTTTATCGTGAGCCAGGCAAATCCCCACATTGCGCCATTACTGAGAATGAAGGAAATAATAAGGTCTTACGG AGGCAACTTTGCAGCTAAGCTTGCTCATCTTACTGAGATGGAGGTGAAACACAGATGCAATCAGGTACTAGAACTTGGCTTTCGTTTGGGGGGTCTTGCC AAGCTCTTTGCTCAAGATTGGGAAGGTGATGTCACTGTCGTAATGCCGGCAACACTTGCTCAGTACTCGAAAATCATACAAAATCCAACTCACGTGGAGC TTCAGAAGGCAGTGAACCAAGGGAGAAGGGGAACATGGGAAAAGCTTTCAGCGATGAAAGCCAACTGCGGTATCGAGCTTGCTCTTGACGAGTGTGTCGC TATTCTTAACCATATGCGTCGACTCAAAAGGAGTGCCGAGAGAGCCGCTGCTGCTTCTCATGGTCTGCCCAACCCGGTCAAATTCAACGCTTCGAGAAGG ATTCCTTCTTGGAACTGCATTGCCCGGGAGAACTCCACAGGGTCGCTTGAGGACTTCCTCGTCGATGTTGCTTCCTCATTTCAACACTCTCCAGGAGCTG CCGGAAGAAATGCACGATTAAGTCATCGAAACGTTCACGACGGAAGCGACAGTGAATCCGAGAGCAACAACGACGTACATTCCTGGACGAGATCCGGAGG ACCACTGATGAGGACTTCTTCCGCAAACTTGTTCGTCGACTTTGTCCAAAACCTCGACGTGGATTCTGAAATCACCAGAGGGGGTTTGATGGTATACCCC AACTCCCCTGGGGCGCAGGTCTCGGTCAGGGAGAGCTCCTCCAGGGTGACATCTCCGGGCAGAAACTCGGAGAGCGAAATGGATCATCACAGGGACTTGA GCGGTAAAGCATCGCCCAGTGGCTCTACTAGCATAGTTGTGACTGAAGGCGACCTCATACAGCCTGAATGTAACCATAACGGGTTCGTGTTGAATGTAGT AAGGAGAGAAGACCTGGAAACGATACGTCAAAGACCCGGTAATGTGGAAACAACCTGTGGAACTGACGTCCCTGAGTCGATCCTGCTCGATTCTCCGGAG AAGGATGCAGATGCCAGCTCAGTATCTGAATATGCTGTTGATAACGACGATGAAGATGGTGTTAGTCCGACAGGCCTAGCAGATGACGAAGCTTCCCCTC CTAGTATTGTCGGCGAATCCAGGTCGCCTGAACGTGGCCATGATTTGATCTGA
AA sequence Show only first row Show all	>Lus10038968 pacid=23150579 polypeptide=Lus10038968 locus=Lus10038968.g ID=Lus10038968.BGIv1.0 annot-version=v1.0 MDISNEATVDLFPIGPSSILGRTIAFKVLFCKSMGSLRHQIFQLLLRYIYRFKAFLGPMLSWLHPRNPQWILAMVTVIAFLLKRHTSLKTKAEMAYRRKF WRNMMRAALTYEEWAHAAKMLDKETPKLNESDFYDEELVRNKLQELHHRRQEGSLRDIMFFMRADLIRNLGNMCNPELHKGRLHVPRLIKDYIDEVSTQL RMVCDSDSEELSLEEKLSFMHETRHAFGRTALLLSGGASLGAFHGGVVKTLVEHKLLPRIIAGSSVGSIMCSVVATRSWPELQSFFEDSLQSLQFFDQLG GIFSIVKRVMIQGAVHDIRQLQWMLRNLTSNLTFQEAFDMTGRILGITVCSPRKHEPPRCLNYLNSPHVVIWSAVTASCAFPGLFEAQELMAKDRSGEIV PYHPPFNLAPEEGSGTSTRRWRDGSLEIDLPMMQLKELFNVNHFIVSQANPHIAPLLRMKEIIRSYGGNFAAKLAHLTEMEVKHRCNQVLELGFRLGGLA KLFAQDWEGDVTVVMPATLAQYSKIIQNPTHVELQKAVNQGRRGTWEKLSAMKANCGIELALDECVAILNHMRRLKRSAERAAAASHGLPNPVKFNASRR IPSWNCIARENSTGSLEDFLVDVASSFQHSPGAAGRNARLSHRNVHDGSDSESESNNDVHSWTRSGGPLMRTSSANLFVDFVQNLDVDSEITRGGLMVYP NSPGAQVSVRESSSRVTSPGRNSESEMDHHRDLSGKASPSGSTSIVVTEGDLIQPECNHNGFVLNVVRREDLETIRQRPGNVETTCGTDVPESILLDSPE KDADASSVSEYAVDNDDEDGVSPTGLADDEASPPSIVGESRSPERGHDLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Lus10038968 [exp]	0	1
AT2G15695			Protein of unknown function DU...		Lus10014042 [exp]	5.0	0.8573
AT2G46550			unknown protein		Lus10030237 [exp]	6.2	0.8124
AT4G32190			Myosin heavy chain-related pro...		Lus10041037 [exp]	12.5	0.8433
AT3G45300		IVDH, ATIVD, IV...	isovaleryl-CoA-dehydrogenase (...		Lus10036122 [exp]	13.1	0.8560
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Lus10026983 [exp]	14.3	0.8415
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10041287 [exp]	15.0	0.8289
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Lus10020178 [exp]	18.2	0.8361
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10014149 [exp]	19.4	0.8339
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Lus10023493 [exp]	19.9	0.8371
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10014352 [exp]	22.6	0.7737

Compare expression of checked genes

Lus10038968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.