Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50375 471 / 2e-169 CPI1 cyclopropyl isomerase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027259 [exp] 440 / 6e-148 AT5G04040 1168 / 0.0 SUGAR-DEPENDENT1, Patatin-like phospholipase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G093500 [exp] 467 / 1e-167 AT5G50375 449 / 4e-161 cyclopropyl isomerase (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038969 pacid=23150457 polypeptide=Lus10038969 locus=Lus10038969.g ID=Lus10038969.BGIv1.0 annot-version=v1.0 ATGATCGTCGTTAGACTCTTATCAAGTTCTGATAGCTACGCAGGTCAAAAACCGGCCACCGCCGATTCCCCCGGTTCTACCAGCTTATGGCTCCCTTCCA ACAGCAGCAAGAGATGGGCTGAGCTTTTCTTCCTCCTGTACACTCCTTTCTGGCTCACTTTTTGTCTCGGCGTTATCGTTCCTTTCAAGCTCTACGAGAG TTTTACGGAGTTGGAGTATCTGCTTGTGGGATTAGTTTCTGCAGTTCCTGCTTTCTTGATACCAGCACTGGTTGTTGGAAAGGCTGATAGAGGTTTGCCT TTCAAGGAACGTTACTGGGTCAAGGCCAGCGTGTGGATAATCATTTTCAGCTATGTGGGGAACTACTTTTGGACACACTATTTCTTTACAGTTTTGGGGG CTGAATACACATTCCCGTCATGGAAAATGAATAATGTTCCACACACCACTTTTCTTCTGACTCATGTTTGCTTCCTGTTCTACCATGTTACCTCGAACAT AACACTTCGCAGGCTACGCCAAGCTACTGCTGACTTGCCACGTCCCATTCGGTGGGCATTCGAGGCATCTTGGATTTTGGCTCTTTCATATTTCATAGCA TACTTGGAGACGATAGCCATCGCCAATTTCCCTTACTACGATTTTGTTGACCGAGAAGCCATGTACAGAGTTGGGTGCTTGTTCTATGCTATCTACTTCA TCGTTAGCTTCCCCATGTTTCTGAGGATCGATGAGAAACCAGGCGACGTGTGGGACTTGCAAAGGGTAGCTGTCGATGCTCTCGGAGCTGCGATGCTGGT TACGATAATACTCGACTTATGGCGACTCTTCCTTGGACCAATTGTGGCACTCCCCGAGACAAAGCAATGTCTTCAACCTGGGCTCCCATGGTTCGCTGGA CATGCCAACCAGACTTAG
AA sequence Show only first row Show all	>Lus10038969 pacid=23150457 polypeptide=Lus10038969 locus=Lus10038969.g ID=Lus10038969.BGIv1.0 annot-version=v1.0 MIVVRLLSSSDSYAGQKPATADSPGSTSLWLPSNSSKRWAELFFLLYTPFWLTFCLGVIVPFKLYESFTELEYLLVGLVSAVPAFLIPALVVGKADRGLP FKERYWVKASVWIIIFSYVGNYFWTHYFFTVLGAEYTFPSWKMNNVPHTTFLLTHVCFLFYHVTSNITLRRLRQATADLPRPIRWAFEASWILALSYFIA YLETIAIANFPYYDFVDREAMYRVGCLFYAIYFIVSFPMFLRIDEKPGDVWDLQRVAVDALGAAMLVTIILDLWRLFLGPIVALPETKQCLQPGLPWFAG HANQT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50375		CPI1	cyclopropyl isomerase (.1.2)		Lus10038969 [exp]	0	1
AT2G02061			Nucleotide-diphospho-sugar tra...		Lus10031330 [exp]	1.7	0.9407
AT5G49170			unknown protein		Lus10036097 [exp]	3.9	0.9033
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10041055 [exp]	5.3	0.9382
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10002419 [exp]	8.3	0.9330
AT5G20500			Glutaredoxin family protein (....		Lus10017148 [exp]	10.2	0.9177
AT3G04830			Protein prenylyltransferase su...		Lus10001785 [exp]	10.2	0.9152
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Lus10004480 [exp]	10.4	0.8915
AT1G52140			unknown protein		Lus10006040 [exp]	10.7	0.9266
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10027688 [exp]	11.2	0.9190
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10012557 [exp]	11.4	0.9102

Compare expression of checked genes

Lus10038969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.