Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10190 152 / 2e-46 Calcium-binding EF-hand family protein (.1) AT2G41410 148 / 1e-44 Calcium-binding EF-hand family protein (.1) AT1G66400 87 / 1e-21 CML23 calmodulin like 23 (.1) AT1G24620 88 / 2e-21 EF hand calcium-binding protein family (.1) AT2G15680 86 / 5e-21 AtCML30 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) AT3G59440 84 / 3e-20 Calcium-binding EF-hand family protein (.1) AT3G51920 83 / 5e-20 CML9, CAM9, ATCML9 CALMODULIN LIKE PROTEIN 9, calmodulin 9 (.1) AT2G43290 83 / 2e-19 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT3G07490 79 / 1e-18 AtCML3, AGD11 calmodulin-like 3, ARF-GAP domain 11 (.1) AT4G03290 78 / 5e-18 EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027261 [exp] 317 / 5e-111 AT2G41410 168 / 2e-52 Calcium-binding EF-hand family protein (.1) Lus10014709 [exp] 85 / 9e-21 AT4G14640 162 / 4e-52 calmodulin-like 8, calmodulin 8 (.1) Lus10014708 [exp] 85 / 1e-20 AT4G14640 163 / 2e-52 calmodulin-like 8, calmodulin 8 (.1) Lus10004330 [exp] 82 / 8e-20 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1) Lus10004088 [exp] 82 / 1e-19 AT4G14640 159 / 5e-51 calmodulin-like 8, calmodulin 8 (.1) Lus10024574 [exp] 81 / 3e-19 AT1G24620 143 / 4e-44 EF hand calcium-binding protein family (.1) Lus10028913 [exp] 81 / 5e-19 AT1G24620 204 / 5e-68 EF hand calcium-binding protein family (.1) Lus10014050 [exp] 81 / 5e-19 AT2G15680 239 / 4e-81 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10027701 [exp] 81 / 1e-18 AT2G43290 153 / 2e-46 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G043700 [exp] 177 / 3e-56 AT2G41410 176 / 2e-55 Calcium-binding EF-hand family protein (.1) Potri.016G040900 [exp] 177 / 5e-56 AT3G10190 175 / 2e-55 Calcium-binding EF-hand family protein (.1) Potri.005G215700 [exp] 94 / 3e-24 AT3G22930 200 / 8e-67 calmodulin-like 11 (.1) Potri.014G070700 [exp] 92 / 7e-23 AT1G18210 94 / 2e-24 Calcium-binding EF-hand family protein (.1.2) Potri.017G029700 [exp] 88 / 3e-21 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.007G128600 [exp] 84 / 8e-20 AT2G43290 218 / 3e-72 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.010G107100 [exp] 83 / 9e-20 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1) Potri.008G134300 [exp] 82 / 2e-19 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1) Potri.002G047300 [exp] 82 / 4e-19 AT3G22930 171 / 3e-54 calmodulin-like 11 (.1) Potri.006G065900 [exp] 82 / 9e-19 AT3G07490 131 / 1e-38 calmodulin-like 3, ARF-GAP domain 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10038970 pacid=23150421 polypeptide=Lus10038970 locus=Lus10038970.g ID=Lus10038970.BGIv1.0 annot-version=v1.0 ATGAAGGTCTTCAAGATCATCACCAATCCCAAATCCCTAAATCTCAGCCCCTCCCGCCTCTTCCGCTCCAAAAAATCCACATCCACCGTCTCCAGATCCG ACCCTTCCTCCTTCAGCTCCTCCATTTCCGATTCTTCCTCTTCCAAGCACCCACACTCCTCCGCCACCCCCAAGAGCGTCCTCCCTCATCAATCCTCCGG CGAATGGTCGTCCGATCTATCCGAAAACCTCCAGAGCGCCTTCCGTGTGATCGACAGGGACAACGACGGATTTGTCTCGAAACAAGACTTAACGGCGCTT CTGAGCCGATTGGGGGCTGAGGAGGAAGTAGCTACGATGTTGAGCGAGGTGGATCTCCATGGGGATGGATGTGTGACGGTGGAGGCGCTGATGGACCAGA TCGGGTCTGGGTGGGAGCCGGCGGGGAGGGAGGAGCTGAAGGAGACGTTCGAGTTCTTTGATACGGACCACGACGGGAAGATAACGGCGGAGGAGCTGTT GAGTGGGTTTGTGGCCGTTGGGGAGGAGAAGTGCACGTTAGAGGAGTGCCGGCGAATGTTAGCGGAGGTAGATAAGAATGGGGATGGGTTTGTCTGCTTG GAGGACTTTTGTAGAATGATGGACCTTCAGAGTGCATTTTAA
AA sequence Show only first row Show all	>Lus10038970 pacid=23150421 polypeptide=Lus10038970 locus=Lus10038970.g ID=Lus10038970.BGIv1.0 annot-version=v1.0 MKVFKIITNPKSLNLSPSRLFRSKKSTSTVSRSDPSSFSSSISDSSSSKHPHSSATPKSVLPHQSSGEWSSDLSENLQSAFRVIDRDNDGFVSKQDLTAL LSRLGAEEEVATMLSEVDLHGDGCVTVEALMDQIGSGWEPAGREELKETFEFFDTDHDGKITAEELLSGFVAVGEEKCTLEECRRMLAEVDKNGDGFVCL EDFCRMMDLQSAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41410			Calcium-binding EF-hand family...		Lus10038970 [exp]	0	1
AT2G41410			Calcium-binding EF-hand family...		Lus10027261 [exp]	1.0	0.9467
					Lus10039442 [exp]	4.0	0.8948
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10017141 [exp]	5.2	0.8637
AT1G11300			protein serine/threonine kinas...		Lus10007600 [exp]	5.3	0.8568
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10020773 [exp]	5.7	0.8673
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10002309 [exp]	8.4	0.8745
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Lus10041838 [exp]	9.8	0.8728
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10025882 [exp]	13.2	0.8822
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10034897 [exp]	17.3	0.8497
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014689 [exp]	18.5	0.8230

Compare expression of checked genes

Lus10038970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.