Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04050 690 / 0 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2) AT1G74350 206 / 3e-56 Intron maturase, type II family protein (.1) ATMG00520 81 / 2e-15 ATMG00520.1, MATR Intron maturase, type II family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027263 [exp] 1471 / 0 AT5G04050 690 / 0.0 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2) Lus10036278 [exp] 241 / 1e-75 AT5G04050 87 / 8e-21 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2) Lus10021359 [exp] 253 / 1e-72 AT1G74350 838 / 0.0 Intron maturase, type II family protein (.1) Lus10017036 [exp] 88 / 1e-18 AT1G74350 200 / 1e-58 Intron maturase, type II family protein (.1) Lus10017037 [exp] 41 / 0.0005 AT1G74350 168 / 7e-50 Intron maturase, type II family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G043650 [exp] 1044 / 0 AT5G04050 742 / 0.0 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2) Potri.005G063750 [exp] 231 / 1e-64 AT1G74350 877 / 0.0 Intron maturase, type II family protein (.1) Potri.007G062302 [exp] 90 / 2e-18 ATMG00520 1095 / 0.0 Intron maturase, type II family protein (.1) Potri.004G132450 [exp] 60 / 4e-09 AT1G30010 988 / 0.0 Intron maturase, type II family protein (.1) Potri.003G086801 [exp] 48 / 3e-05 AT5G46920 1150 / 0.0 Intron maturase, type II family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0027 [flax] [poplar] RdRP PF00078 [flax] [poplar] RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) CL0359 [flax] [poplar] Intron-mat_II PF01348 [flax] [poplar] Intron_maturas2 Type II intron maturase
Representative CDS sequence Show only first row Show all	>Lus10038971 pacid=23150584 polypeptide=Lus10038971 locus=Lus10038971.g ID=Lus10038971.BGIv1.0 annot-version=v1.0 ATGCTCAGAAGAACAAAACCCATTTGTTCACAGCTCATCAAACCCTCCTTCTTCTGCTCATCTCTTCCCCTTCGACACTCAAACCTGCAACAAGAAACCC CAACGCAACAAAACCCCATCATCGAACCCTTGTCCCAAACCCAGCTCAAATCTCTCGTCCTATCCAACTGCTCCTACGGCAAGTTCCACAATCTCATCCA AAACGTCGTCGCTTTACCCCCCGTCCTCCTCTCCGCCTCTCAAAACCTAATCCCCAACACCACCGCCCCTGCCGCCTCTCCAAAATGCTCTCTTCACCAA TTGGTATCCAACCGTCTCTCCCTGGAGGCGATGAGTCGCGAGATATTCGAAAACCGACTTGATATCGAATCCCATTGTGTCAAATTCGCAGGTAAAAGTG ACTGCTTGGTCCTGCCTGATTTGAAGCTGAAAGTTTTGATTGAATCTATCAGGATGGTGCTTGAGATTGTTTACGATGACCGATTCGTTACGTTATCATA TGGCGGTCGGGTCAATATGGGACGACACACTGCCATTAGGTACTTGAAGAACTCTGTTGAGAATCCTAGTTGGTGGTTTAGAGTTCATTTCGAAAATCAG CAGTTTGACAGTAGAAATGTGGAGTTGTTGTGTTTGATCCTGGAAGATAAAGTTAAGGACAAGATTTTGATTAGCTTGATAAGAAGATTGTTCGATTCCG GAGTGCTCAGGATTGAATTAGGTGGGTTGTATTTAGGTAGAGGCTTCCCTCAAGAATGCGGGTTGTGCTCGATTTTGATCAACGTTTACTTCAATGGATT CGATAAAGAGATTCAAGAACTAAGGCTGCAACTGAATCGGGAGAATCCTAGAACTGATGTCAATAACGATGATGATAATAAGGAAAACCCGAGTCCTTTG TATAAGCCGGTGAAGATGTATGCAGTTAGGTACTTGGACGAGATACTAGTGATTACATCCGGACCGAAGAAGTTGGCTATTGGTTTAAAGAGCAGATTTT TGAAGATTTTAGAGAGTGATTTCGAACTGAAGGTCAATAAAGGGAGGACGATAATTCACAGTGCAGTTTCGGAGAAGATGAACTTTATCGGATTCGGATT GCAGGCGGTGCAGCCTTCGGTGTTACACCCACCCATGTCGGAGAAGGCGATTCGAGCAAGGAAGAAATATCTACACCAGAAGGAAGTTCGAGCTTCAGAA CTCAAAAATGCTCGAGAGAGAAACCGGAAGAAACTGGGGTTGAAAATATTGCGACATGTTGTCAAGAAGGCCAAACAGAGTAACGGATTCAAATCCGATT TCGAAATTGAAAATGAAGTTCAAGTTCAACAGATATTTGCAGTATGGGCTGATGAAACAGTTAAAGAGTTTCTAAGCTCGTTAGACGAGCGATGGAATTG GCACCGTTTGCTCACTAGTGGCAGTTTCCTCAATCTGAGGCATATTAGAGAAATGCTGCCAGAGGAGCTTGTCGAATCCTACGACAAGTTTCAAAGACAA GTAGAGAAGCACTTGTCACCAGTCAAGGAAAGAAGAGCAATAGAGGAAGCGGAGAAACGATCCGAAGAAGCAGAAGAAAGGAGATATGCCGATAGAACAG TAGCCGACCTAACGAAGCTGTCGATGAAAGTATCTGCACCGATCGAGTTGATTAGGGAAGCGGTTAGGATGGCGGGTTTTACAAACAACATGGGTCGTCC AAGGCCAATCAATTGGCTAACTAATCTCGAAGATGCCGATATTATCAAATGGTACGCAGGGGTCGGAGAAAGATGGCTCGACTTCTTCTGCTGCTGCCAC AACTTTAAAATGGTGAAGACGATTGTAACTTATCACCTGAGGTTTTCTTGTTTGCTGACATTAGCAGAGAAGCACGAAGCGACAAAACTCGAGACGATTA AACATTACACCAAGAATTTGAGAGTTTCGTTTATGGAAGGGAACGATGAATATTACTTTCCTACAGAGAAGGAAGTGAAGATGATGGGAGATAAGAATCT TTCGGATCCGAAACCGGTGGATGGAGCTTTGTCGTTGCAGTTGATTCGATTGGCTTGTGACGATGAGCCATTAAATTCATGCACTGCTCATTTTTGTGAT AGAACAGATACGATTACCTATCGTGTGAGGTTACTGCAAAATTTGTTAGGTGCAAACCCTGCTAATGGAGATAAATGGGTCTCTGGCATGGGTGCAATAC ATGACAGTCTGCATCAGATATGCCTTCCTCTTTGTCCTGATCACATAAGCGACTTATACACTGGGAGAATTAGCCTTCAAGACATTGACTGTTCTTCCTT TGTGGATGTGGACTGA
AA sequence Show only first row Show all	>Lus10038971 pacid=23150584 polypeptide=Lus10038971 locus=Lus10038971.g ID=Lus10038971.BGIv1.0 annot-version=v1.0 MLRRTKPICSQLIKPSFFCSSLPLRHSNLQQETPTQQNPIIEPLSQTQLKSLVLSNCSYGKFHNLIQNVVALPPVLLSASQNLIPNTTAPAASPKCSLHQ LVSNRLSLEAMSREIFENRLDIESHCVKFAGKSDCLVLPDLKLKVLIESIRMVLEIVYDDRFVTLSYGGRVNMGRHTAIRYLKNSVENPSWWFRVHFENQ QFDSRNVELLCLILEDKVKDKILISLIRRLFDSGVLRIELGGLYLGRGFPQECGLCSILINVYFNGFDKEIQELRLQLNRENPRTDVNNDDDNKENPSPL YKPVKMYAVRYLDEILVITSGPKKLAIGLKSRFLKILESDFELKVNKGRTIIHSAVSEKMNFIGFGLQAVQPSVLHPPMSEKAIRARKKYLHQKEVRASE LKNARERNRKKLGLKILRHVVKKAKQSNGFKSDFEIENEVQVQQIFAVWADETVKEFLSSLDERWNWHRLLTSGSFLNLRHIREMLPEELVESYDKFQRQ VEKHLSPVKERRAIEEAEKRSEEAEERRYADRTVADLTKLSMKVSAPIELIREAVRMAGFTNNMGRPRPINWLTNLEDADIIKWYAGVGERWLDFFCCCH NFKMVKTIVTYHLRFSCLLTLAEKHEATKLETIKHYTKNLRVSFMEGNDEYYFPTEKEVKMMGDKNLSDPKPVDGALSLQLIRLACDDEPLNSCTAHFCD RTDTITYRVRLLQNLLGANPANGDKWVSGMGAIHDSLHQICLPLCPDHISDLYTGRISLQDIDCSSFVDVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04050			RNA-directed DNA polymerase (r...		Lus10038971 [exp]	0	1
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013870 [exp]	6.0	0.7866
AT4G24560		UBP16	ubiquitin-specific protease 16...		Lus10015893 [exp]	6.9	0.7809
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10000912 [exp]	16.1	0.7810
AT2G36240			pentatricopeptide (PPR) repeat...		Lus10017041 [exp]	19.4	0.7713
AT2G46915			Protein of unknown function (D...		Lus10007214 [exp]	24.2	0.7766
AT3G49142			Tetratricopeptide repeat (TPR)...		Lus10014746 [exp]	24.7	0.7278
AT2G34400			Pentatricopeptide repeat (PPR-...		Lus10010320 [exp]	27.0	0.7305
AT2G45270		GCP1	glycoprotease 1 (.1)		Lus10030285 [exp]	31.1	0.7737
AT5G40270			HD domain-containing metal-dep...		Lus10022228 [exp]	33.5	0.7493
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10007881 [exp]	33.9	0.7689

Compare expression of checked genes

Lus10038971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.