Plant FIBer expression Database

Lus10038972 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G10190 674 / 0 Major facilitator superfamily protein (.1)
AT1G78130 658 / 0 UNE2 unfertilized embryo sac 2, Major facilitator superfamily protein (.1)
AT4G36790 367 / 5e-122 Major facilitator superfamily protein (.1)
AT2G18590 280 / 1e-88 Major facilitator superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027264
[exp]
385 / 9e-133 AT5G10190 337 / 1e-114 Major facilitator superfamily protein (.1)
Lus10041712
[exp]
322 / 3e-105 AT4G36790 663 / 0.0 Major facilitator superfamily protein (.1)
Lus10026037
[exp]
318 / 1e-103 AT4G36790 639 / 0.0 Major facilitator superfamily protein (.1)
Lus10027265
[exp]
165 / 7e-49 AT5G10190 129 / 3e-36 Major facilitator superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G091800
[exp]
715 / 0 AT5G10190 643 / 0.0 Major facilitator superfamily protein (.1)
Potri.007G091700
[exp]
661 / 0 AT5G10190 660 / 0.0 Major facilitator superfamily protein (.1)
Potri.007G030800
[exp]
340 / 1e-111 AT4G36790 633 / 0.0 Major facilitator superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0015 MFS PF07690 MFS_1 Major Facilitator Superfamily
Representative CDS sequence
>Lus10038972 pacid=23150722 polypeptide=Lus10038972 locus=Lus10038972.g ID=Lus10038972.BGIv1.0 annot-version=v1.0
ATGGTGAATCAGGAGAAGCTGACATTGATACTGGTGAATCTGGCGGCGATCATGGAACGAGCCGACGAATCTTTACTCCCCGGGGTTTACAAAGAAGTCG
GCGCCGCTTTGCACACCGACCCAACTGGATTAGGCTCCTTAACTCTCTACAGATCCATCGTCCAGTCGTCTTGTTACCCGCTGGCGGTTTACCTAGCTTC
CCGCCATAACCGCGCCCACGTTATTGCTCTCGGTGCTTTCCTCTGGGCTGCCGCCACTTTCCTTGTCGCCATTTCCTCCACTTTCTTGCAGGTGGCGATT
TCTAGAGGCCTCAACGGGATCGGACTCGCCATAGTAACACCTGCAATTCTGTCTCTAGTTGCCGATTCCACCGACGATAACAATCGTGGCATGGCGTTCG
GATGGTTACAACTAACAGCAACAATCGGCTCCATCATCGGAGGCCTGTGTTCCGTACTCATTGCTTCAACAACCATCATGGGGATTCCAGGCTGGCGAGT
TGCTTTCCATCTTGTTGCAGTAATAAGCGTAGTAGTTGGTATATTGGTCCGCCTATTCGCTCACGATCCGAAGTTCTCCGAGAAAAGGCACTCCAACTCG
AACTCTGCCAGTTCTTTTATGTCGGAAATGAAGGATTTGCTAGCAGAGGCCAAATCTGTGATGAAGATACCATCTTTCCAGATAATTGTGGCTCAAGGGG
TCTCCGGATCATTTCCATGGTCAGCTTTATCGTTCGCTCCAATGTGGTTAGAACTCATTGGCTTCTCTCACGAAAAGACGGCAGTCCTCATGACACTCTT
CACCGTCGCAATATCCATCGGCGGTCTGTTCGGAGGCAAAATGGGAGACACTCTTGCGAAACGGTTCCCAAATTCCGGGAGGATCGTCCTTTCTCAAATA
AGCTCCGGTTCGGCCATACCTTTAGCTGCTTTTCTTCTGCTGGTACTGCCTGATGATCCCTCGACAGGTTTCATGCACGGTCTGGTCTTGTTCGTCATGG
GGCTGTCGATCTCGTGGAATGGTCCCGCTACAAACAATCCGATATTTGCGGAGATAGTCCCAGAGAAATCAAGAACGAGCATCTACGCGCTCGACAGATC
ATTCGAGTCGATATTAGCTTCGTTCGCTCCTCCGGTCGTTGGAATCTTGGCTCAACATCTATACGGGTATCAAGTTCCGAAGAGATCTTCAGAGACCGTC
CGGGTCGAGACAGACAGGGAGAATGCAGCCTCTCTTGCCAAGGCGCTCTACTCGGCGATCTGTATACCGATGCTGCTGTGTTGCTCTATCTACTCTTTTC
TTTATTGCACGTACCCGAGAGACCGTGACCGTGCGAAAATGACTGCACTGATAGAATCAGAGCTGCATCGAATGGATTGCAGTGATGATGATGATGATGA
AGACAGTAAAGTTGTGGAAGAAGATGGACGGACCGTCATTGAGATCGAGTATGGGAAAGATGAAGAGACTGTTGGTTTGGATGATGGTGATAGTAATGCT
TTGCTTTCTGGTGATCAGCTTTCTAACTTGGATCATAGATGA
AA sequence
>Lus10038972 pacid=23150722 polypeptide=Lus10038972 locus=Lus10038972.g ID=Lus10038972.BGIv1.0 annot-version=v1.0
MVNQEKLTLILVNLAAIMERADESLLPGVYKEVGAALHTDPTGLGSLTLYRSIVQSSCYPLAVYLASRHNRAHVIALGAFLWAAATFLVAISSTFLQVAI
SRGLNGIGLAIVTPAILSLVADSTDDNNRGMAFGWLQLTATIGSIIGGLCSVLIASTTIMGIPGWRVAFHLVAVISVVVGILVRLFAHDPKFSEKRHSNS
NSASSFMSEMKDLLAEAKSVMKIPSFQIIVAQGVSGSFPWSALSFAPMWLELIGFSHEKTAVLMTLFTVAISIGGLFGGKMGDTLAKRFPNSGRIVLSQI
SSGSAIPLAAFLLLVLPDDPSTGFMHGLVLFVMGLSISWNGPATNNPIFAEIVPEKSRTSIYALDRSFESILASFAPPVVGILAQHLYGYQVPKRSSETV
RVETDRENAASLAKALYSAICIPMLLCCSIYSFLYCTYPRDRDRAKMTALIESELHRMDCSDDDDDEDSKVVEEDGRTVIEIEYGKDEETVGLDDGDSNA
LLSGDQLSNLDHR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G10190 Major facilitator superfamily ... Lus10038972
[exp]
0 1
AT2G17650 AMP-dependent synthetase and l... Lus10028375
[exp]
7.2 0.9026
AT4G30600 signal recognition particle re... Lus10017891
[exp]
7.6 0.9380
AT5G15270 RNA-binding KH domain-containi... Lus10036767
[exp]
11.2 0.9166
AT4G25030 unknown protein Lus10036513
[exp]
13.0 0.9096
AT1G47890 AtRLP7 receptor like protein 7 (.1) Lus10003387
[exp]
13.7 0.9043
AT4G30600 signal recognition particle re... Lus10035066
[exp]
17.1 0.9203
AT1G71840 transducin family protein / WD... Lus10031629
[exp]
23.0 0.8968
AT1G49670 NQR ARP protein (REF) (.1), ARP pr... Lus10027904
[exp]
31.0 0.9133
AT3G11920 glutaredoxin-related (.1) Lus10012909
[exp]
31.8 0.9077
AT4G35110 Arabidopsis phospholipase-like... Lus10007582
[exp]
44.7 0.9060

Lus10038972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.