Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04060 904 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G10200 893 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G04430 488 / 2e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G23300 484 / 5e-165 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G14360 482 / 4e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G14430 467 / 3e-158 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G06050 447 / 1e-149 Putative methyltransferase family protein (.1) AT2G39750 447 / 3e-149 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G77260 426 / 6e-142 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G64030 400 / 9e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027266 [exp] 1149 / 0 AT5G04060 890 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10022291 [exp] 499 / 4e-171 AT5G14430 881 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10003656 [exp] 498 / 1e-170 AT5G14430 872 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10011815 [exp] 475 / 2e-161 AT1G04430 1045 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10004702 [exp] 438 / 3e-146 AT2G39750 1021 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001013 [exp] 434 / 9e-145 AT2G39750 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030155 [exp] 433 / 4e-144 AT2G39750 1049 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10040268 [exp] 428 / 5e-143 AT2G39750 967 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10021177 [exp] 410 / 2e-136 AT1G04430 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G043600 [exp] 977 / 0 AT3G10200 928 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G342300 [exp] 488 / 8e-167 AT5G14430 893 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G036800 [exp] 469 / 6e-159 AT1G04430 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G226000 [exp] 463 / 6e-157 AT1G04430 939 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G059500 [exp] 449 / 9e-151 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G199300 [exp] 440 / 3e-147 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 429 / 1e-142 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075300 [exp] 404 / 5e-134 AT4G00740 965 / 0.0 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.003G087600 [exp] 403 / 2e-133 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 403 / 3e-133 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10038973 pacid=23150686 polypeptide=Lus10038973 locus=Lus10038973.g ID=Lus10038973.BGIv1.0 annot-version=v1.0 ATGGGTAATCATCCCTTGGCAATTTCATCTTTCAATTCCAAGTCATGGAAGCTCATATTGCTAGCTCCCCTGTTAATGACGGCATCTTTTTACCTTGGCA CACTCTTCGGCAACAATGTACCCATCTATGTCGGTCGTCTCTCCTCCAATTCCTCCTCTCTCTCTGTCCCTGGTAGCTCCACGTTTACTAATAGAGTTGC TATTGCTTACCGAGAAACGCCATTGAAGATCCCGGAAACCGGGATGAATGTGTGCCCGTTGAAGTTCAATGAGTATATACCTTGCCATGACATTGCTTAT GTTCACACTTTGCTTCCAAGCTTGAATCTTTCTAGAAGAGAAGAGCTGGAACGGCATTGTCCTCCACCCGAGAAGCGCTTATTTTGCTTAGTACCGCCAC CTGAAGACTATAGATTGCCTATAAAATGGCCGACCAGCCGAGATTATGTCTGGCGAAGCAATGTCAATCATACGCATCTTGCAGAGGTTAAAGGAGGGCA GAATTGGGTTCATGAGAAGGATCAGTTGTGGTGGTTCCCCGGTGGGGGGACCCATTTCAAGCACGGTGCACCGGAGTATATCCAGAGGTTAGGAAATATG ACAACTGATGAAACAGGTGATCTGCGATCAGCTGGAGTGTTTCAGGTGCTGGATGTTGGCTGTGGTGTTGCGAGCTTTTCAGCCTATCTGCTTGCACTGG ATATTCAGACGATGTCATTTGCGCCCAAAGATGGTCATGAAAATCAGATTCAGTTCGCTCTCGAGCGAGGAATTGGTGCCATGATATCTGCCATAGCCAC AAAGCAAATGCCATATCCATCTAATTCTTTTGAGATGGTTCATTGTTCGAGATGTCGTGTTGATTGGCATGAGAATGATGGAATTTTACTCAAAGAAGTT AACCGCATTCTGCGCTATAATGGATACTTCATCTATTCAGCTCCACCTGCATACAGAAAGGATAAAGATTATCCAATGATATGGGATAAGTTGATGAATC TGACTTCAGCAATGTGCTGGAAGCTCATATCTCGAAAAGTTCAGACTGCTGTGTGGATTAAGAAGGAAGATGATGCTTGCATCCTAAAAAATGCTGAGAT GAAACTTATAGATATCTGTGACTCGGTCGATAATCTGAAATCTTCTTGGAACGTACCATTAAGAAGCTGCATATCAACGAGTGCAGATACCGTTTCCCAG CAGCTACCTCCTAGACCTCAGCGTTTGTCGGTGTATTCACAGAGTCTTAGAAGTCTAGGTATTAGGGCTGCCGAATTCACGGAAGATTCACAATTCTGGC AAGATCAAGTTCGTAATTATTGGAAACTGATGAACGTGAAGGGGACTGAGGTAAGAAACATCATGGATATGAATGCACATCTGGGAGGATTCTCTGTCGC TTTAAGCAAAAGGCCGGTCTGGGTGATGAATGTGGTTCCTATGACGATGAATAATACGTTGTCAGCAATTTACGACCGGGGCCAATTAGGCGTCTTTCAC GACTGGTGTGAGCCATTTTCGACGTATCCACGTACGTACGATTTACTGCATGCCAACCGTCTATTTAGTCACTATAAAAACCACGGAGAAGCTTGTAGAG TAGAAGATATTGTCCTGGAGATGGATCGTATGTTACGCCCTCAGGGATTTGTCATTATTAGAGACAAAGAACCGGTTATATCGAGAATACGTGATCTGGC ACCAAAGTTTTTGTGGGAAGTGGAAACACAGTCTCTAGAGAACAAGGAGAAGAAGATGGAGAGTGTGCTATTCTGCAGGAAGAAGTTTTGGGCGATTGTT TAA
AA sequence Show only first row Show all	>Lus10038973 pacid=23150686 polypeptide=Lus10038973 locus=Lus10038973.g ID=Lus10038973.BGIv1.0 annot-version=v1.0 MGNHPLAISSFNSKSWKLILLAPLLMTASFYLGTLFGNNVPIYVGRLSSNSSSLSVPGSSTFTNRVAIAYRETPLKIPETGMNVCPLKFNEYIPCHDIAY VHTLLPSLNLSRREELERHCPPPEKRLFCLVPPPEDYRLPIKWPTSRDYVWRSNVNHTHLAEVKGGQNWVHEKDQLWWFPGGGTHFKHGAPEYIQRLGNM TTDETGDLRSAGVFQVLDVGCGVASFSAYLLALDIQTMSFAPKDGHENQIQFALERGIGAMISAIATKQMPYPSNSFEMVHCSRCRVDWHENDGILLKEV NRILRYNGYFIYSAPPAYRKDKDYPMIWDKLMNLTSAMCWKLISRKVQTAVWIKKEDDACILKNAEMKLIDICDSVDNLKSSWNVPLRSCISTSADTVSQ QLPPRPQRLSVYSQSLRSLGIRAAEFTEDSQFWQDQVRNYWKLMNVKGTEVRNIMDMNAHLGGFSVALSKRPVWVMNVVPMTMNNTLSAIYDRGQLGVFH DWCEPFSTYPRTYDLLHANRLFSHYKNHGEACRVEDIVLEMDRMLRPQGFVIIRDKEPVISRIRDLAPKFLWEVETQSLENKEKKMESVLFCRKKFWAIV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10038973 [exp]	0	1
AT1G72480			Lung seven transmembrane recep...		Lus10008125 [exp]	1.4	0.9518
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10010957 [exp]	1.7	0.9437
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10027266 [exp]	2.0	0.9449
AT3G08900		RGP3	reversibly glycosylated polype...		Lus10000646 [exp]	3.3	0.9129
AT5G27490			Integral membrane Yip1 family ...		Lus10029935 [exp]	4.2	0.9201
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10042497 [exp]	4.5	0.9371
AT1G72480			Lung seven transmembrane recep...		Lus10013162 [exp]	4.5	0.9411
AT5G62580			ARM repeat superfamily protein...		Lus10036647 [exp]	4.9	0.9264
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Lus10017741 [exp]	5.2	0.8930
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10001733 [exp]	5.3	0.9235

Compare expression of checked genes

Lus10038973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.