Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56740 371 / 5e-130 Ubiquitin-associated (UBA) protein (.1) AT2G41160 339 / 1e-117 Ubiquitin-associated (UBA) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027269 [exp] 441 / 9e-158 AT3G56740 420 / 2e-149 Ubiquitin-associated (UBA) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G040100 [exp] 383 / 8e-135 AT3G56740 432 / 3e-154 Ubiquitin-associated (UBA) protein (.1) Potri.016G035800 [exp] 320 / 3e-110 AT3G56740 380 / 7e-134 Ubiquitin-associated (UBA) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Lus10038976 pacid=23150590 polypeptide=Lus10038976 locus=Lus10038976.g ID=Lus10038976.BGIv1.0 annot-version=v1.0 ATGAACGGAGGTCCCTCTGGGTTCAACAATGCGCCAGTCACGAGAGCTTTCGTCATCGCTTCTACGCTCTTCTCACTCTTCTTTGGGATCAAGGGAAGGT CTGCCAAGTTTGGATTGTCCTATCAGGATATTTTTGGAAAGCTCCGAGTCCTGAAGCTGATTGCCTCAGTTTTTTCCTTTTCATCTACACCAGAATTGGT GTTTGGACTTGGTCTTTTGTATTACTTCAGAGTTTTTGAGAGGCAGATTGGATCAAACAAGTATTCAGTATTTATCATGTTCTCTACGGTCGGGTCCTTG CTCTTTGAGGTCCTTGCACTATCACTTCTTAAAGATCCATCTTTGAACTTGCTCACGCCTGGACCTTATGGCCTCATTTTTGCTTCATTCGTGCCCTTTT TCTTCGACATTCCGGTATCCACATGGTTCCGTGTCTTCGGTATCCGCTTCTCCGATAAGTCCTTCATATATCTTGCCGGTCTGCAGCTTCTGCTATCATC CTGGAAAAGGTCTCTCATACCTGGAATCTGCGGCATCATCGCTGGATCTTTGTATCGTCTGAATTTCCTTGGTATCCGTAAAGCAAAGTTCCCTGAATTC CTGGCTACATTTTTCTCGCGGTTTTCTTGGCCATCTACTGGAAGTTCCCGTGGTTCAACAACTAGAGTTGGATCGGCAACTGTTCCATCACAAGCAGGTC GCCATGTGGAGAGAACCTATCCAGCCCCAGTCCCTTCATCGGTAGAACCATCAGAGGCCTCGATCACGACATTAGTCTCGATGGGATTTGACAGGAACTC GGCAAGACAAGCTCTTGTGCAGGCAAGGAACGACGTCAATATAGCCACCAACATCCTTCTTGAAGCGCAAGCACACTGA
AA sequence Show only first row Show all	>Lus10038976 pacid=23150590 polypeptide=Lus10038976 locus=Lus10038976.g ID=Lus10038976.BGIv1.0 annot-version=v1.0 MNGGPSGFNNAPVTRAFVIASTLFSLFFGIKGRSAKFGLSYQDIFGKLRVLKLIASVFSFSSTPELVFGLGLLYYFRVFERQIGSNKYSVFIMFSTVGSL LFEVLALSLLKDPSLNLLTPGPYGLIFASFVPFFFDIPVSTWFRVFGIRFSDKSFIYLAGLQLLLSSWKRSLIPGICGIIAGSLYRLNFLGIRKAKFPEF LATFFSRFSWPSTGSSRGSTTRVGSATVPSQAGRHVERTYPAPVPSSVEPSEASITTLVSMGFDRNSARQALVQARNDVNIATNILLEAQAH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56740			Ubiquitin-associated (UBA) pro...		Lus10038976 [exp]	0	1
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10003077 [exp]	1.4	0.8988
AT5G47060			Protein of unknown function (D...		Lus10019494 [exp]	1.4	0.9015
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10024172 [exp]	3.9	0.8834
AT1G72510			Protein of unknown function (D...		Lus10008118 [exp]	5.5	0.8615
AT2G41150			unknown protein		Lus10022403 [exp]	9.4	0.8502
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10011901 [exp]	10.0	0.8111
AT4G17420			Tryptophan RNA-binding attenua...		Lus10007800 [exp]	10.4	0.7756
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10039550 [exp]	10.5	0.8640
AT2G42760			unknown protein		Lus10005429 [exp]	11.1	0.8764
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10011990 [exp]	15.0	0.8255

Compare expression of checked genes

Lus10038976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.