Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58730 421 / 1e-150 vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027271 [exp] 496 / 2e-180 AT3G58730 439 / 7e-158 vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G331800 [exp] 434 / 8e-156 AT3G58730 412 / 4e-147 vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01813 [flax] [poplar] ATP-synt_D ATP synthase subunit D
Representative CDS sequence Show only first row Show all	>Lus10038979 pacid=23150347 polypeptide=Lus10038979 locus=Lus10038979.g ID=Lus10038979.BGIv1.0 annot-version=v1.0 ATGTCAGGCCAAGGAAATCGCTTGAATGTAGTCCCAACAGTCACAGTGCTAGCAGTTGTGAAAGCTCGTCTTGTTGGTGCTACAAGGGGCCATGCACTTC TGAAGAAAAAGAGTGATGCTTTAACCGTGCAATTCCGACAGATTCTAAAGAAGATCGTATCAACTAAAGAGTCTATGGGAGATATCATGAAGGCCTCCTC CTTCGCCCTCACCGAGGCCAAGTACGTTGCCGGCGAGAACATCAAGCACGTCGTCCTAGAGAACGTGAAGAGCGCATCTCTCAAAGTCCGATCTCGTCAA GAGAATGTCGCCGGTGTGAAGCTGCCCAAGTTCGAGTACATCTCTGAAGGCGACACCAAGAACGACCTAACCGGACTGGCCAGAGGTGGGCAGCAGGTCC AGAAATGCCGCGGCGCCTATATCAAAGCGATCGAGGTTCTCGTCGAGCTCGCCTCGCTTCAGACATCCTTCGTAACACTCGACGAGGCAATCAAGACGAC AAACCGCAGGGTTAACGCGCTCGAGAATGTGGTGAAGCCCAGACTGGAGAACACGATCTCGTACATCAAGGGGGAGCTGGACGAGCTCGAAAGAGAAGAT TTCTTCAGGCTGAAGAAGATCCAAGGTTACAAGAAGAGGGAGATCGAGAAGCAGAAGGCTAACTCGAAGGAGTTTGCGGAGGAACAGGTTGCTGAGAAGA TGTCTTTGCAGCGAGGTATCTCAGTCGCTTCTGCTCAGAATATGTTGGCTGCAGGTGGCGCCAAGGATGATGATATCATCTTTTGA
AA sequence Show only first row Show all	>Lus10038979 pacid=23150347 polypeptide=Lus10038979 locus=Lus10038979.g ID=Lus10038979.BGIv1.0 annot-version=v1.0 MSGQGNRLNVVPTVTVLAVVKARLVGATRGHALLKKKSDALTVQFRQILKKIVSTKESMGDIMKASSFALTEAKYVAGENIKHVVLENVKSASLKVRSRQ ENVAGVKLPKFEYISEGDTKNDLTGLARGGQQVQKCRGAYIKAIEVLVELASLQTSFVTLDEAIKTTNRRVNALENVVKPRLENTISYIKGELDELERED FFRLKKIQGYKKREIEKQKANSKEFAEEQVAEKMSLQRGISVASAQNMLAAGGAKDDDIIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58730			vacuolar ATP synthase subunit ...		Lus10038979 [exp]	0	1
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10016538 [exp]	2.4	0.8900
AT5G40510			Sucrase/ferredoxin-like family...		Lus10022274 [exp]	4.2	0.8509
AT2G33040		ATP3	gamma subunit of Mt ATP syntha...		Lus10007534 [exp]	6.2	0.8844
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10004963 [exp]	9.5	0.8403
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Lus10012171 [exp]	9.9	0.8433
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032155 [exp]	12.0	0.8711
AT4G30010			unknown protein		Lus10015329 [exp]	13.7	0.8538
AT5G47030			ATPase, F1 complex, delta/epsi...		Lus10040130 [exp]	15.6	0.8758
AT1G72430			SAUR-like auxin-responsive pro...		Lus10013181 [exp]	19.3	0.8250
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10040807 [exp]	23.2	0.8487

Compare expression of checked genes

Lus10038979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.