Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27410 68 / 6e-13 B3 Domain of unknown function (DUF313) (.1) AT2G32645 62 / 2e-11 Domain of unknown function (DUF313) (.1) AT2G31420 62 / 3e-11 B3 Domain of unknown function (DUF313) (.1) AT1G05920 54 / 3e-08 B3 Domain of unknown function (DUF313) (.1) AT2G24670 45 / 3e-05 B3 Domain of unknown function (DUF313) (.1) AT5G24050 41 / 0.0007 B3 Domain of unknown function (DUF313) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027284 [exp] 476 / 7e-170 AT2G27410 67 / 2e-12 Domain of unknown function (DUF313) (.1) Lus10027272 [exp] 299 / 5e-102 AT2G27410 66 / 9e-13 Domain of unknown function (DUF313) (.1) Lus10009354 [exp] 188 / 1e-59 AT2G31420 57 / 2e-10 Domain of unknown function (DUF313) (.1) Lus10030994 [exp] 137 / 4e-37 AT2G27410 60 / 4e-10 Domain of unknown function (DUF313) (.1) Lus10030996 [exp] 128 / 6e-34 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1) Lus10035393 [exp] 122 / 9e-34 AT2G27410 68 / 4e-14 Domain of unknown function (DUF313) (.1) Lus10035394 [exp] 114 / 1e-30 AT2G27410 61 / 1e-11 Domain of unknown function (DUF313) (.1) Lus10015934 [exp] 91 / 9e-21 AT2G27410 48 / 3e-06 Domain of unknown function (DUF313) (.1) Lus10027287 [exp] 83 / 1e-18 AT2G31420 47 / 1e-06 Domain of unknown function (DUF313) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G014200 [exp] 53 / 1e-07 AT3G24850 73 / 2e-14 Domain of unknown function (DUF313) (.1) Potri.015G014700 [exp] 52 / 2e-07 AT3G24850 75 / 8e-15 Domain of unknown function (DUF313) (.1) Potri.019G076500 [exp] 50 / 8e-07 AT2G27410 61 / 2e-10 Domain of unknown function (DUF313) (.1) Potri.013G065401 [exp] 45 / 1e-05 AT2G24670 51 / 5e-08 Domain of unknown function (DUF313) (.1) Potri.013G031600 [exp] 43 / 0.0002 AT2G27410 59 / 2e-09 Domain of unknown function (DUF313) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF03754 [flax] [poplar] DUF313 Domain of unknown function (DUF313)
Representative CDS sequence Show only first row Show all	>Lus10038980 pacid=23150648 polypeptide=Lus10038980 locus=Lus10038980.g ID=Lus10038980.BGIv1.0 annot-version=v1.0 ATGGCGATGAGTTCTTTTAAAGGCGCCGGATCAAGCTGGTCCAATTTGAAGCTTTTAACTGAATGCGCTATGCTCGTGGGACAATGCAATTATAACGATT CTGTCTGCGATCACTCTGATCCGACCAGTTGCTTTCTCACCGTCACAAAGGCCAAAAACCGCAAAAGGAAGGCTGAGGCTGCTGCTTCTTCTCTGCAGTT CTGCAACATCCCCAGGATGAAAAGGTCCAAGCTTTTTCATCGCTCTCCATCCGCCGTTGTCTTTCCGTCCATCCATGACGTCAACTCTGTTTCTCCTCCT CCAAACACCACCATTACTCTGTTTCCGCTTGCACCAGATCAGAAGCCAATTCTTGCGCCGCCGCCGATCACCACTATCGTCTCCAACTCTGATCACCACC GTCATCGACCACCACCACTCCGAGCGGGAGAAGATTCCGTGTCGTCTTTCCCATCGAGCCTGAGGGCTAAGGTTTCTGAATCTGTGGGGGAAAGCGTGGA AGGCGAATTTACTCTGGTGGTCCGGAAGAAATTGAGGCAGACAGATCTGAGAATTCACAATTGCCGTCTTTCGATCCCGACGACGAAGGTTGCGAACGAG TTTTTGACGGCTGGAGAGAATAGAGAACTGGACACGGCTAGGCACACCAAGATTGGGTGTTTTATCGATCCGGATATGGAGGTTTCGCGGCAAGTGTCGT TGAGGAGGTGGGCGATGGGGAGCGGCTACGTCGACAACATCATCGGAGAAGGGTGGAAGAATGTCCTGAAGAAGCAACGGAGCAACCTTATTGATCTTGC TGAAAACGATGTGGTGGAGCTCTGGAGTTTCAGGTCAAGTTCAGGAGAGCTCTGTTTTGTACTGGTTACTTTGGAAGCAAGGCAAAAGGCTGAGAAGGAA CAAGGACTAATGATGATCGAATATGGAACAAGTCCAGCGACAAGCAGCGCTGTTACTCGAGAAGACGAAAGCCCTCTTCAGATTGTGTCTACCGGCAACT GTGATGATATTGATTTGACTCTTAGACTGTAA
AA sequence Show only first row Show all	>Lus10038980 pacid=23150648 polypeptide=Lus10038980 locus=Lus10038980.g ID=Lus10038980.BGIv1.0 annot-version=v1.0 MAMSSFKGAGSSWSNLKLLTECAMLVGQCNYNDSVCDHSDPTSCFLTVTKAKNRKRKAEAAASSLQFCNIPRMKRSKLFHRSPSAVVFPSIHDVNSVSPP PNTTITLFPLAPDQKPILAPPPITTIVSNSDHHRHRPPPLRAGEDSVSSFPSSLRAKVSESVGESVEGEFTLVVRKKLRQTDLRIHNCRLSIPTTKVANE FLTAGENRELDTARHTKIGCFIDPDMEVSRQVSLRRWAMGSGYVDNIIGEGWKNVLKKQRSNLIDLAENDVVELWSFRSSSGELCFVLVTLEARQKAEKE QGLMMIEYGTSPATSSAVTREDESPLQIVSTGNCDDIDLTLRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27410	B3		Domain of unknown function (DU...		Lus10038980 [exp]	0	1
					Lus10028460 [exp]	2.0	0.8381
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Lus10019534 [exp]	3.0	0.8373
					Lus10022865 [exp]	5.2	0.7943
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Lus10003109 [exp]	7.2	0.8578
AT5G55690	MADS		MADS-box transcription factor ...		Lus10014095 [exp]	10.6	0.8324
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10009145 [exp]	11.2	0.6548
AT5G52390			PAR1 protein (.1)		Lus10040714 [exp]	11.5	0.7764
AT5G41720			unknown protein		Lus10006473 [exp]	17.7	0.7682
AT2G20540		MEF21	mitochondrial editing factor ...		Lus10007685 [exp]	18.1	0.6212
AT4G15733		SCRL11	SCR-like 11 (.1)		Lus10029762 [exp]	20.9	0.8067

Compare expression of checked genes

Lus10038980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.