Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43810 300 / 1e-106 CAM7 calmodulin 7 (.1) AT5G21274 299 / 4e-106 ACAM-6, CAM6 calmodulin 6 (.1) AT3G56800 298 / 5e-106 ACAM-3, CAM3 calmodulin 3 (.1) AT2G27030 298 / 5e-106 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT2G41110 298 / 5e-106 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT1G66410 295 / 1e-104 ACAM-4, CAM4 calmodulin 4 (.1.2) AT5G37780 295 / 1e-104 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT3G22930 234 / 3e-80 CML11 calmodulin-like 11 (.1) AT4G14640 231 / 3e-79 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT2G41090 187 / 3e-61 Calcium-binding EF-hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041288 [exp] 300 / 2e-106 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 300 / 2e-106 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10027283 [exp] 300 / 2e-106 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10022589 [exp] 255 / 1e-88 AT3G43810 255 / 2e-88 calmodulin 7 (.1) Lus10021487 [exp] 249 / 3e-86 AT2G41110 255 / 1e-88 calmodulin 2 (.1.2) Lus10039391 [exp] 241 / 6e-83 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10001775 [exp] 191 / 4e-63 AT2G27030 192 / 1e-63 calmodulin 5 (.1.2.3) Lus10009176 [exp] 185 / 1e-60 AT2G27030 186 / 3e-61 calmodulin 5 (.1.2.3) Lus10041179 [exp] 159 / 2e-51 AT4G14640 174 / 2e-57 calmodulin-like 8, calmodulin 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G024700 [exp] 300 / 1e-106 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 300 / 1e-106 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.006G026700 [exp] 300 / 1e-106 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.001G222200 [exp] 300 / 7e-106 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.015G032600 [exp] 283 / 9e-100 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.012G041000 [exp] 281 / 3e-99 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.008G159300 [exp] 238 / 4e-82 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.010G080900 [exp] 237 / 1e-81 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.005G052800 [exp] 216 / 2e-73 AT4G14640 228 / 7e-78 calmodulin-like 8, calmodulin 8 (.1) Potri.013G040300 [exp] 195 / 6e-65 AT3G22930 210 / 1e-70 calmodulin-like 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10038981 pacid=23150255 polypeptide=Lus10038981 locus=Lus10038981.g ID=Lus10038981.BGIv1.0 annot-version=v1.0 ATGGCGGATCAGCTCACCGACGATCAGATCTCCGAGTTCAAGGAGGCCTTCAGCTTGTTCGACAAGGATGGCGATGGTTGCATCACAACCAAGGAGCTTG GAACTGTGATGAGGTCTCTGGGTCAGAACCCAACGGAAGCGGAGCTTCAGGACATGATCAACGAGGTCGATGCTGACGGTAACGGAACCATCGATTTCCC GGAGTTTCTAAACCTGATGGCGAGGAAGATGAAGGACACCGACTCGGAGGAGGAGCTGAAAGAGGCGTTCAGAGTGTTCGACAAGGATCAGAACGGTTTC ATCTCTGCTGCCGAGCTGCGTCACGTGATGACTAACCTAGGGGAGAAGCTAACTGATGAAGAAGTCGATGAGATGATCAGGGAGGCTGACGTGGACGGCG ATGGCCAGATCAATTATGAAGAGTTTGTCAAGGTCATGATGGCTAAGTGA
AA sequence Show only first row Show all	>Lus10038981 pacid=23150255 polypeptide=Lus10038981 locus=Lus10038981.g ID=Lus10038981.BGIv1.0 annot-version=v1.0 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGF ISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10038981 [exp]	0	1
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10017679 [exp]	1.7	0.8906
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022197 [exp]	3.3	0.8682
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10003077 [exp]	3.9	0.8842
AT1G72510			Protein of unknown function (D...		Lus10008118 [exp]	4.2	0.8762
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10025309 [exp]	4.8	0.8984
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Lus10031440 [exp]	5.3	0.8882
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10010999 [exp]	7.9	0.8770
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10017650 [exp]	8.5	0.8644
AT4G00170			Plant VAMP (vesicle-associated...		Lus10036495 [exp]	14.1	0.8413
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Lus10017584 [exp]	15.5	0.8085

Compare expression of checked genes

Lus10038981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.