Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05080 276 / 3e-92 ATUBC22, UBC22 ubiquitin-conjugating enzyme 22 (.1.2) AT2G02760 89 / 3e-21 ATUBC2 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) AT1G14400 89 / 5e-21 ATUBC1, UBC1 UBIQUITIN CONJUGATING ENZYME 1, ubiquitin carrier protein 1 (.1.2) AT5G53300 86 / 4e-20 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT5G41700 86 / 5e-20 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT4G27960 86 / 6e-20 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT1G64230 84 / 2e-19 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT3G08690 82 / 1e-18 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT2G16740 82 / 1e-18 UBC29 ubiquitin-conjugating enzyme 29 (.1) AT1G78870 81 / 3e-18 UBC35 ,UBC13A UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027282 [exp] 370 / 7e-128 AT5G05080 284 / 1e-95 ubiquitin-conjugating enzyme 22 (.1.2) Lus10010433 [exp] 262 / 9e-87 AT5G05080 253 / 6e-85 ubiquitin-conjugating enzyme 22 (.1.2) Lus10012110 [exp] 258 / 4e-85 AT5G05080 260 / 5e-88 ubiquitin-conjugating enzyme 22 (.1.2) Lus10010432 [exp] 98 / 1e-25 AT5G05080 81 / 1e-20 ubiquitin-conjugating enzyme 22 (.1.2) Lus10036727 [exp] 91 / 5e-22 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10037203 [exp] 91 / 5e-22 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10030786 [exp] 89 / 6e-21 AT2G02760 305 / 2e-108 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10013263 [exp] 89 / 7e-21 AT2G02760 304 / 6e-108 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10014942 [exp] 84 / 2e-19 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G026900 [exp] 319 / 7e-109 AT5G05080 376 / 4e-133 ubiquitin-conjugating enzyme 22 (.1.2) Potri.016G024800 [exp] 307 / 3e-104 AT5G05080 372 / 1e-131 ubiquitin-conjugating enzyme 22 (.1.2) Potri.013G064400 [exp] 92 / 3e-22 AT2G02760 313 / 1e-111 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.019G039200 [exp] 89 / 3e-21 AT2G02760 285 / 2e-100 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.015G064000 [exp] 89 / 4e-21 AT2G02760 284 / 3e-100 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.003G136200 [exp] 85 / 1e-19 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.006G110200 [exp] 85 / 1e-19 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.019G131400 [exp] 84 / 1e-19 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.016G138900 [exp] 84 / 1e-19 AT1G64230 304 / 3e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.012G033000 [exp] 84 / 2e-19 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10038982 pacid=23150300 polypeptide=Lus10038982 locus=Lus10038982.g ID=Lus10038982.BGIv1.0 annot-version=v1.0 ATGTTGCGGTTCAAGCTCGATCCTCACACACGGCCGGGTACGGAGCATTGGGGTGATCCACTCATCTTGGAAATGCTAGCTATCCGTTGTGCTTGGGTCA CCGCAAAAGTAGGAAAGGGAAGAGAGATTGCAACTACTGGACTCTCTCTCTCTCTCCCTCCGGTCATTCCCTTGGTTGCAAAGTGTGTTAGTAAGAAAAG GCTCAACAGAAGGAGTGGAATTTCTTGCAAACAACTGGCTATGGCGACAAATGAAAATCTGCCACCCAAAGTGATAAAGCAACTTGCTAAGGAATTGAAG AGCCTGGATGAATCTCCACCGGAGGGTATCAAAGTGGGAGTTAAAGATGATGACCTCTCCGTCATATATGCTGATATTGAAGGACCAGGCGAGATTTCTG GCTGTGCAGATGGGACTCCGTATGAAAATGGCATTTTTCGAATGAAGCTGTTATTGCCACATGACTTTCCACGGCTACCTCCCCAAGGTATTCTGATAGG ATCGGCATTCCGTCTCTTCTTACCATTTGGTTTCTTTCTAACCAAGATATTTCACCCGAACATTTCAAGTGATGGAAGTATCTGTGTCAATGCACTAAAA AAGGACTGGAGTCCAAGTCTTGGACTGCGACATGTTCTTGTTGTCGTGAGGTGCTTATTGATTGAACCATTTCCTGAATCTGCCCTTAACGAGCAGGCTG CAAAGATGCTGCTAGAAAATTACGAGGATTACTTCGAACATGCCAGATTGATCACTGAAATTTATGCAAAGCCGAAACCCAAGTTCAAGTCCGGAGCCAT TTCAGAGTCAGCTACTGCACTGAATGTAGACCAGAGTAACACCTCAGTTGACCACAAGAATGCGGCAGGAGCTGGTGTTGCTGTGCCATCCACGTTAGCA CCTTGTTCAGCCACCTCTAAGGAAGTTGGTTCGACAGTAACAGCCGAGACAGGAGGTGGTGTTGCACCTGCTATCGTTACGACTTCCACAAAACTAGCGG CCATGAAGGAGGTTGCTGCTGCCGGACAGGTGAAAGCTCCGGTGGCCAAGAAGAAGATGGATGCTAGGAAGAAGAGCTTGAAGAGACTATAA
AA sequence Show only first row Show all	>Lus10038982 pacid=23150300 polypeptide=Lus10038982 locus=Lus10038982.g ID=Lus10038982.BGIv1.0 annot-version=v1.0 MLRFKLDPHTRPGTEHWGDPLILEMLAIRCAWVTAKVGKGREIATTGLSLSLPPVIPLVAKCVSKKRLNRRSGISCKQLAMATNENLPPKVIKQLAKELK SLDESPPEGIKVGVKDDDLSVIYADIEGPGEISGCADGTPYENGIFRMKLLLPHDFPRLPPQGILIGSAFRLFLPFGFFLTKIFHPNISSDGSICVNALK KDWSPSLGLRHVLVVVRCLLIEPFPESALNEQAAKMLLENYEDYFEHARLITEIYAKPKPKFKSGAISESATALNVDQSNTSVDHKNAAGAGVAVPSTLA PCSATSKEVGSTVTAETGGGVAPAIVTTSTKLAAMKEVAAAGQVKAPVAKKKMDARKKSLKRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Lus10038982 [exp]	0	1
AT4G17760			damaged DNA binding;exodeoxyri...		Lus10030971 [exp]	1.0	0.8664
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10040855 [exp]	4.0	0.8627
AT5G44560		VPS2.2	SNF7 family protein (.1.2)		Lus10038407 [exp]	5.7	0.8328
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10008855 [exp]	6.2	0.8491
AT5G14640		ATSK13	shaggy-like kinase 13 (.1)		Lus10022254 [exp]	8.1	0.8434
AT3G48425			DNAse I-like superfamily prote...		Lus10043333 [exp]	10.5	0.8126
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10005520 [exp]	11.0	0.8200
AT1G68730			Zim17-type zinc finger protein...		Lus10019154 [exp]	21.4	0.8120
AT4G03100			Rho GTPase activating protein ...		Lus10009778 [exp]	21.6	0.8088
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10019997 [exp]	22.3	0.8412

Compare expression of checked genes

Lus10038982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.