Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56720 100 / 1e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027280 [exp] 751 / 0 AT3G56720 129 / 4e-33 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G039900 [exp] 271 / 8e-86 AT3G56720 129 / 3e-33 unknown protein Potri.016G036000 [exp] 259 / 5e-81 AT3G56720 124 / 3e-31 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038984 pacid=23150601 polypeptide=Lus10038984 locus=Lus10038984.g ID=Lus10038984.BGIv1.0 annot-version=v1.0 ATGGACTCTAAGCCACAGTCTTCTCCACCTAATACTGCTGAGACAAAAGCAACTTTCCGCAGGCCTTCAAATGATGTTGCTGGCAGGAAATATAGACGGC GTTCTCCTGATAATCAGTCACCGGAAGACCCTGATAGTCCCAAGAATTATCACAGGTCCAGTCCAATCTTTTCTAGGGGGGAGCCTGCTAAAGTATCTGA ACAAAGAGAACAAAGGAAGGACCAAGAAAGAAAATTTGACAGGGATCAGCTTGTAAAAGGCAGAGATTCTTACAAACAAGTTGATGGCCGCCCACCTAAG AATCCTCATCCTTACTCGAAGCATGATGACTACAGCAGAGTTGAGAAGTATGCAGATGAAGACAGACACAATCAGAAAAGGGAGTCAAGTGGTACAGCTC GCACTGATCGTGCAAGAATAGACTATGATAATGGTCGGTCAAGGGATTTCAGTAGGAATGCAGAAAAATACTCCCTTGATAGGGACACTTCAAGAAGTAA GGAGAAAGGATCATATTCTGATGATCGTCATAAATACAAAGATAAGCGCATGTCACCTGATAGACATGTATCGAAGAAACCAACTAATTCAAATTATGAG GACCTAGATTCAGTCCGTCACAGAGGAGGCCGCAATCGAGATGAGGGAAGAGGTTATCGCAGAAACTCTGATTACAAAAGTGAAAGTACAGATTATTGCG AAGAAGCAATGGGATTTGTTAAAGAGTCCAGCTCTTCTAGAAGGGACAGTGAGAAGTACCGCTCTAGAGAATCGCACAAAAGTAATCCCTTGGAAATTGA GAGTCGAAGAGAAAAGAAACGCGACGATTATGAAACCAACAGAGACAAGCATACTAACTCCAGATCAGCAGGACATGATGATGAAAAATCTGTTCGTGTG AGTGAATCTCAGCAATCCGAGGCCAAAAGGCCAAAGCTCTTTGGTTCAGATCATGATGTTGGCCAGAGCAGAGATGGTGAAAACCGGTCTCCAAGCCCAA AACAGGTCACATCTGCCAGTAACGTTTCTGTAGGCAATTCTTCTGAAGTTACCAATGATCTGAATGCGGCAAAGGTTGCTGCCATAAAAGCTGCTGAATT AGTGAATAAAAATCTTGTGGGCGGGAGCTTTATGTCTACTGACCAGAAGAAGAAACTGCTTTGGGGTAACAAGAAGAGCACCACCAGCACCACTGCAGTA GAGCCCTCTGGTCATGGGTGGGATACTACACTGTTTGGCGATCGTGAAAGGCAAGAGAAGTTCAACAAACTCATGGGTGTGAAGGGGGACGGGAAGGTGG AAACGAAGACCAGCAGCAAACCAGAAGGCGGCGGCCATCTCTTAGCCGAAAAGCAGGAGCAGCTCCAGGTGGAGTTAGAGAAGCAGTACACAGCGGGGCT TCGAAGGAGAGACGGCCGTACAGTTGGATTGGGGCTCTGA
AA sequence Show only first row Show all	>Lus10038984 pacid=23150601 polypeptide=Lus10038984 locus=Lus10038984.g ID=Lus10038984.BGIv1.0 annot-version=v1.0 MDSKPQSSPPNTAETKATFRRPSNDVAGRKYRRRSPDNQSPEDPDSPKNYHRSSPIFSRGEPAKVSEQREQRKDQERKFDRDQLVKGRDSYKQVDGRPPK NPHPYSKHDDYSRVEKYADEDRHNQKRESSGTARTDRARIDYDNGRSRDFSRNAEKYSLDRDTSRSKEKGSYSDDRHKYKDKRMSPDRHVSKKPTNSNYE DLDSVRHRGGRNRDEGRGYRRNSDYKSESTDYCEEAMGFVKESSSSRRDSEKYRSRESHKSNPLEIESRREKKRDDYETNRDKHTNSRSAGHDDEKSVRV SESQQSEAKRPKLFGSDHDVGQSRDGENRSPSPKQVTSASNVSVGNSSEVTNDLNAAKVAAIKAAELVNKNLVGGSFMSTDQKKKLLWGNKKSTTSTTAV EPSGHGWDTTLFGDRERQEKFNKLMGVKGDGKVETKTSSKPEGGGHLLAEKQEQLQVELEKQYTAGLRRRDGRTVGLGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56720			unknown protein		Lus10038984 [exp]	0	1
AT5G12230		MED19A	unknown protein		Lus10028832 [exp]	5.5	0.8947
AT3G09010			Protein kinase superfamily pro...		Lus10018481 [exp]	8.4	0.8360
AT1G75440		UBC16	ubiquitin-conjugating enzyme 1...		Lus10041791 [exp]	8.5	0.8566
AT3G48470		EMB2423	embryo defective 2423 (.1)		Lus10001100 [exp]	12.0	0.8747
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10025280 [exp]	14.0	0.8807
AT3G27260		GTE8	global transcription factor gr...		Lus10014609 [exp]	15.2	0.8531
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10008197 [exp]	20.0	0.8875
AT5G17240		SDG40	SET domain group 40 (.1)		Lus10035757 [exp]	23.3	0.8715
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10036689 [exp]	25.4	0.8646
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Lus10042997 [exp]	25.4	0.8465

Compare expression of checked genes

Lus10038984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.