Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56710 51 / 2e-08 SIB1 sigma factor binding protein 1 (.1) AT2G41180 48 / 3e-07 SIB2 sigma factor binding protein 2, VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027279 [exp] 172 / 1e-54 AT3G56710 46 / 2e-06 sigma factor binding protein 1 (.1) Lus10024139 [exp] 48 / 4e-07 AT3G56710 58 / 5e-11 sigma factor binding protein 1 (.1) Lus10039494 [exp] 48 / 5e-07 AT3G56710 56 / 3e-10 sigma factor binding protein 1 (.1) Lus10026165 [exp] 46 / 1e-06 AT3G56710 44 / 3e-06 sigma factor binding protein 1 (.1) Lus10039493 [exp] 47 / 2e-06 AT3G56710 54 / 1e-09 sigma factor binding protein 1 (.1) Lus10008659 [exp] 44 / 1e-05 ND 44 / 4e-06
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G038900 [exp] 57 / 1e-10 AT2G41180 56 / 2e-10 sigma factor binding protein 2, VQ motif-containing protein (.1) Potri.016G036600 [exp] 57 / 3e-10 AT3G56710 48 / 2e-07 sigma factor binding protein 1 (.1) Potri.001G029700 [exp] 52 / 8e-09 AT3G56710 54 / 5e-10 sigma factor binding protein 1 (.1) Potri.003G194700 [exp] 50 / 3e-08 AT3G56710 54 / 6e-10 sigma factor binding protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10038985 pacid=23150477 polypeptide=Lus10038985 locus=Lus10038985.g ID=Lus10038985.BGIv1.0 annot-version=v1.0 ATGATTCAGATGGAAACCCTGCTAATGGATAAGAAGGGCGCCAAGAAGAAGAAGATGAAAAAAGCTGGATCATCATCAAACAACAGCTGCAGAAAGGAAG AAGTGATGAAAGTGGTGTACATCTCCAACCCAATGAAGTTCCAGATCTGCGCCTCCGAGTTCCGCTCCCTCGTTCAGCAACTCACCGGCCAGTACGCCGA CTACCCTTCTCTTCATCATCACTACTCATCACCATCCAACTCTTCCTCCTGCAATTACCCCACTGTTTATAATAATTCTATCGGCGGGGAATTTCATCGA ACAGTTGGTGAGCATAATTATCCGCTGCTGTTTAGTACTCCCGATCTAACCTCCGCGGCTGAAAGCGACGTCGTCGACCAAGCTGTGGAAGTTGCGCAGC AGACTAATTACGGATCATCATCATGTGCTGGAAATGATATTGACGAGGATGATGATGAGGTGGCGGCTGTGGTCCAAGAGGAGTGTAACGACGACGCTTT CGTGCCGGAGATGTTGGAGAATTCTACCATGTTTTATTCTTGGCATTTGGATATGATTAGTAGCTGA
AA sequence Show only first row Show all	>Lus10038985 pacid=23150477 polypeptide=Lus10038985 locus=Lus10038985.g ID=Lus10038985.BGIv1.0 annot-version=v1.0 MIQMETLLMDKKGAKKKKMKKAGSSSNNSCRKEEVMKVVYISNPMKFQICASEFRSLVQQLTGQYADYPSLHHHYSSPSNSSSCNYPTVYNNSIGGEFHR TVGEHNYPLLFSTPDLTSAAESDVVDQAVEVAQQTNYGSSSCAGNDIDEDDDEVAAVVQEECNDDAFVPEMLENSTMFYSWHLDMISS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10038985 [exp]	0	1
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031804 [exp]	2.8	0.9144
AT5G57710			Double Clp-N motif-containing ...		Lus10020886 [exp]	3.5	0.8866
AT3G47110			Leucine-rich repeat protein ki...		Lus10040184 [exp]	4.2	0.8670
AT3G19320			Leucine-rich repeat (LRR) fami...		Lus10002828 [exp]	5.5	0.8914
AT5G55480		GPDL1, GDPDL4, ...	glycerophosphodiesterase-like ...		Lus10018042 [exp]	8.5	0.8895
AT2G21910		CYP96A5	"cytochrome P450, family 96, s...		Lus10028047 [exp]	9.8	0.8497
AT1G66920			Protein kinase superfamily pro...		Lus10025547 [exp]	9.9	0.8724
AT3G57120			Protein kinase superfamily pro...		Lus10011517 [exp]	10.4	0.8619
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10003839 [exp]	10.9	0.8003
AT1G23850			unknown protein		Lus10030860 [exp]	13.4	0.8844

Compare expression of checked genes

Lus10038985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.