Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10230 772 / 0 AtLCY, LYC lycopene cyclase (.1.2) AT5G57030 261 / 4e-81 LUT2 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027278 [exp] 957 / 0 AT3G10230 832 / 0.0 lycopene cyclase (.1.2) Lus10013298 [exp] 462 / 4e-159 AT3G10230 508 / 3e-177 lycopene cyclase (.1.2) Lus10021576 [exp] 268 / 4e-83 AT5G57030 805 / 0.0 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1) Lus10017156 [exp] 266 / 6e-78 AT5G57030 801 / 0.0 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1) Lus10005190 [exp] 155 / 4e-45 AT3G10230 159 / 3e-48 lycopene cyclase (.1.2) Lus10005189 [exp] 127 / 3e-35 AT3G10230 131 / 2e-38 lycopene cyclase (.1.2) Lus10000221 [exp] 110 / 8e-28 AT5G57030 251 / 9e-82 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G043092 [exp] 831 / 0 AT3G10230 794 / 0.0 lycopene cyclase (.1.2) Potri.016G040200 [exp] 813 / 0 AT3G10230 770 / 0.0 lycopene cyclase (.1.2) Potri.009G159800 [exp] 503 / 2e-175 AT3G10230 538 / 0.0 lycopene cyclase (.1.2) Potri.004G197100 [exp] 491 / 7e-171 AT3G10230 533 / 0.0 lycopene cyclase (.1.2) Potri.006G147300 [exp] 254 / 1e-77 AT5G57030 723 / 0.0 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1) Potri.001G229166 [exp] 142 / 2e-40 AT3G10230 137 / 7e-40 lycopene cyclase (.1.2) Potri.001G219250 [exp] 64 / 2e-12 AT3G10230 62 / 8e-13 lycopene cyclase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05834 [flax] [poplar] Lycopene_cycl Lycopene cyclase protein
Representative CDS sequence Show only first row Show all	>Lus10038986 pacid=23150404 polypeptide=Lus10038986 locus=Lus10038986.g ID=Lus10038986.BGIv1.0 annot-version=v1.0 ATGGATACCATGCTCAAGGCACATAACAGGCTTGAATGGTTACCTCAATTCCACGGCTGTTCAGAAATTCTGAGTAATTCAAGCTCCTCCAGGGTTCAAA CCTTAGATTTTGGGTTGTCTCCTAAGAAGTCTGGTTCAAAGAGAGGCAGAATTGTGGGTGTTAGGGCTACTACTAGTAGTAGTAGTGCCCTTTTGGAGCT TGTGCCAGAAACTAAGAAGGAAAGTCTTGCATTTGAACTTCCATTGTATGACCCTTCAAAGGGTCGTGTCGTCGACCTTGCTGTCGTGGGTGGCGGTCCG GCCGGATTAGCCGTGGCACAACAAGTTTCGGAGGCGGGGCTTTCAGTTTGTTCGATCGATCCGTCCCCTCAGTTGGTGTGGCCTAACAATTATGGTGTGT GGGTGGATGAGTTCGAGGCTATGGATCTGCTCGATTGCCTTGATACAACCTGGTCCGGTGCTGTTGTATACATTGATGAGAAATCGAAAAAGGATCTTGG TAGGCCTTACGGAAGGGTTAATAGGAAGCAACTCAAGTCGAAAATGCTGCAGAAATGCATCAAGAATGGTGTGATGTTTCATCAAGCTAAAGTCGTCAAG GTTATCCACGAGGAGTCCAAATCATTGTTGATATGCAATGATGGCGTTACGATCCAGGCTGCAGTGGTGCTTGATGCCACCGGTTTCTCTAGGTGCCTGG TTCAGTATGATAAGCCGTATAACCCTGGTTACCAGGTAGCCTATGGAATTTTGGCAGAAGTGGAAGAACACCCGTTTGATGTGGATAAGATGTTGTTTAT GGATTGGAGAGATTCCCACCTTGATGGCAATGCTGAATTGAAAGAGAGGAATGGAAAGATCCCGACTTTTCTGTATGCAATGCCTTTCTCTAAAGACAGG ATTTTCCTGGAAGAAACTTCGTTAGTTGCTCGCCCTGGGCTTCGAATGGAGGATATCCAGGAAAGAATGGTGGCTAGATTGAGGCACTTAGGCATCAAAG TCAAGAGTATTGAAGAAGACGAGCGCTGCGTAATACCGATGGGAGGGCCTCTTCCAGTCCTTCCTCAAAGAGTCGTGGGAATAGGTGGAACTGCTGGCAT GGTGCACCCTTCGACCGGGTATATGGTGGCGCGAACTCTAGCTGCAGCTCCGATCGTCGCAAATGCCATCGTCAGATTCCTCGGTTCTCATAAAGGGATC AACGGAGACGATTTGTCGACAGAAGTGTGGAAAGACTTGTGGCCGATACAGAGGAGGAGACAGAGGGAGTTCTTCTGTTTCGGCATGGACATCTTGCTGA AGCTTGATTTGCCTGCAACAAGAAGGTTCTTTGATGCATTTTTCGACCTGGAACCGCATTACTGGCATGGGTTTCTGTCGTCTAGGCTGTTCCTTCCGGA GCTTTTAACGTTTGGACTTGCACTGTTTGGTAAGGCTTCTAATACTTCTAGGATAGAGATTATGTCCAAGGGAACTCTTCCTTTGGTTCAGATGATCAAT AACCTGGTTAAGGATACAGAATAG
AA sequence Show only first row Show all	>Lus10038986 pacid=23150404 polypeptide=Lus10038986 locus=Lus10038986.g ID=Lus10038986.BGIv1.0 annot-version=v1.0 MDTMLKAHNRLEWLPQFHGCSEILSNSSSSRVQTLDFGLSPKKSGSKRGRIVGVRATTSSSSALLELVPETKKESLAFELPLYDPSKGRVVDLAVVGGGP AGLAVAQQVSEAGLSVCSIDPSPQLVWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVYIDEKSKKDLGRPYGRVNRKQLKSKMLQKCIKNGVMFHQAKVVK VIHEESKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDVDKMLFMDWRDSHLDGNAELKERNGKIPTFLYAMPFSKDR IFLEETSLVARPGLRMEDIQERMVARLRHLGIKVKSIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRFLGSHKGI NGDDLSTEVWKDLWPIQRRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPHYWHGFLSSRLFLPELLTFGLALFGKASNTSRIEIMSKGTLPLVQMIN NLVKDTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10038986 [exp]	0	1
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Lus10021627 [exp]	2.0	0.9227
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10000518 [exp]	4.8	0.9263
AT1G76080		ATCDSP32, CDSP3...	ARABIDOPSIS THALIANA CHLOROPLA...		Lus10005624 [exp]	5.8	0.8799
AT5G19540			unknown protein		Lus10023641 [exp]	10.1	0.8721
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Lus10016033 [exp]	12.6	0.9108
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10037407 [exp]	14.2	0.8625
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10002710 [exp]	15.2	0.8974
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Lus10009710 [exp]	15.5	0.8668
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016176 [exp]	16.4	0.8910
AT1G73885			unknown protein		Lus10005112 [exp]	17.1	0.9088

Compare expression of checked genes

Lus10038986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.