Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29140 301 / 2e-96 ADS1 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) AT1G71870 248 / 4e-76 MATE efflux family protein (.1) AT5G19700 178 / 6e-50 MATE efflux family protein (.1) AT1G58340 169 / 2e-46 BCD1, ZRZ, ZF14 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) AT5G52050 164 / 1e-44 MATE efflux family protein (.1) AT5G49130 154 / 3e-41 MATE efflux family protein (.1) AT2G38510 151 / 4e-40 MATE efflux family protein (.1) AT4G23030 148 / 6e-39 MATE efflux family protein (.1) AT1G61890 132 / 2e-33 MATE efflux family protein (.1) AT1G11670 129 / 4e-32 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027277 [exp] 359 / 8e-122 AT1G71870 241 / 1e-75 MATE efflux family protein (.1) Lus10017836 [exp] 309 / 2e-99 AT4G23030 608 / 0.0 MATE efflux family protein (.1) Lus10027417 [exp] 298 / 7e-95 AT4G23030 601 / 0.0 MATE efflux family protein (.1) Lus10028230 [exp] 234 / 1e-70 AT1G58340 567 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10007006 [exp] 177 / 2e-49 AT4G22790 549 / 0.0 MATE efflux family protein (.1) Lus10009788 [exp] 165 / 3e-45 AT5G49130 627 / 0.0 MATE efflux family protein (.1) Lus10012944 [exp] 164 / 2e-44 AT4G29140 639 / 0.0 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) Lus10007231 [exp] 160 / 4e-43 AT1G58340 649 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10009140 [exp] 154 / 4e-41 AT1G64820 560 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G135600 [exp] 304 / 3e-97 AT4G23030 576 / 0.0 MATE efflux family protein (.1) Potri.003G121400 [exp] 303 / 4e-97 AT4G23030 635 / 0.0 MATE efflux family protein (.1) Potri.012G133500 [exp] 303 / 1e-96 AT4G23030 578 / 0.0 MATE efflux family protein (.1) Potri.002G107200 [exp] 289 / 2e-91 AT1G58340 600 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.019G086100 [exp] 286 / 5e-91 AT1G71870 654 / 0.0 MATE efflux family protein (.1) Potri.013G115600 [exp] 274 / 4e-86 AT1G71870 637 / 0.0 MATE efflux family protein (.1) Potri.010G011400 [exp] 181 / 7e-51 AT5G49130 611 / 0.0 MATE efflux family protein (.1) Potri.007G043100 [exp] 166 / 3e-45 AT1G58340 475 / 8e-164 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.016G134800 [exp] 155 / 4e-41 AT2G38510 597 / 0.0 MATE efflux family protein (.1) Potri.010G116700 [exp] 154 / 4e-41 AT5G52450 558 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10038987 pacid=23150541 polypeptide=Lus10038987 locus=Lus10038987.g ID=Lus10038987.BGIv1.0 annot-version=v1.0 ATGGCGGATGAACAAGCAGCATCAGCAGCAGAAAGCTCCAAAGCAGTCGACTTTCCTTCTCCTCACACATCACCCTCTCTGTCTCAGATTTTACAAGAGC TAAAGGAGCTATGGACCATGGCGCTTCCAGTAACGGCGTCCCATCTAATGGCGTTCCTCAGAGCTGCAATATCTGTGGTCTTCCTCGGCCGGCTGGGAAG CTTGGAGCTTGCCGGAGGGGCGCTATCAATCGGGTTTACAAACATAACCGGTTACTCAGTCATGGTCGGGTTGGCTTCCGGGTTGGAACCGGTTTGCAGC CAAGCATACGGGAGCAAGAACTGGGACCTACTCAACCTGTCGTTACAGCGGATGGTTTTGATCCTCTGCGCCGCCGCCGCACCAATAAGCTTCCTGTGGA TCAACCTTCGACCCATTATGGTGTTCCTGGGCCAGGACCCACGAATCGCCTCCGCCGCCGCTACGTACTGTCTCTACTCGCTTCCGGACCTGCTGACCAA CGCGCTCCTCCAGCCGATGAGGGTGTTCTTACGCCCCCCCCCCCAGCCGCTGAGGGTGTTTCTTCGTTCTCAGAACGTGACCAAGCCTGTCATGTACTGC TCACTCGCTGCCGTGGCACTGCACGCGCCGCTGAATTATGTGGCGGTGAATGTGTTGGGGTTGGGGGTGCGTGGGGTGGCGGCTGCGTCGGTGGTGACGA ATGTGAACACGGTGGGTTCGATGGTTGGGTATGTGTGGTGGGCTTCACGCGGCGGGGTGGGGCGTGAGTGGAGGTTTATTGGGTGGTCGGAAGGGGGCGG AGGAGGAGGAGGAGGAGTGGGGCCGCTGTTGAGATTGGCGGGGGGCGGGCGGGGGGGGGGTTGTTTTTGGCGGGGGGTGTTATTATCCTCAGTGGATAGA AGTTTGAATTACTCAGAACTCGTCTCTTACTTTACGGTGGGGAACGAGCTTGGAGCAGGAAATCCACACAGGGCCAAGCTGGCAGCAATGGTGGCATTGG GTTGTGCATTCATCATTGGCATTTTCAACGTGCTATGGACAGTCTTGCTCAGGGAAAGATGGGCCGGTTTGTTCACTAAAGACGACCTCGTCAAGTCCTT TGTCGCTTCGGTCTTGCCGATAATCGGTCTCTGCGAGCTCGGAAACTGCCCTCAAACGACCGGCTGTGGGGTCCTACGTGGCACAGCGAGGCCTGCGATA GCGGCCCGAATCAACCTGGGCTCGTTCTACTGCATCGGGACCCCGGTGGCGGTCGGGTTAGCGTTCGGGTTGAAGCTCGGGTTCCCCGGGTTGTGGTTCG GGCTGTTGTCAGCCCAGGTTGCCTGCGCGGCTTCGATCCTGTATGTGGTTTGGGTTTGTACTGATTGGGAGCATGAGGCTTTGAAGGCCCGGAAGCTGAC CCAGATTGAGATGGGTGGTAGTAGTTGTGGTGGGCCGAAAGAAGGTGATGAAGAAAGTAAAGGGCTTCTTATGGGGAATGATCCATGA
AA sequence Show only first row Show all	>Lus10038987 pacid=23150541 polypeptide=Lus10038987 locus=Lus10038987.g ID=Lus10038987.BGIv1.0 annot-version=v1.0 MADEQAASAAESSKAVDFPSPHTSPSLSQILQELKELWTMALPVTASHLMAFLRAAISVVFLGRLGSLELAGGALSIGFTNITGYSVMVGLASGLEPVCS QAYGSKNWDLLNLSLQRMVLILCAAAAPISFLWINLRPIMVFLGQDPRIASAAATYCLYSLPDLLTNALLQPMRVFLRPPPQPLRVFLRSQNVTKPVMYC SLAAVALHAPLNYVAVNVLGLGVRGVAAASVVTNVNTVGSMVGYVWWASRGGVGREWRFIGWSEGGGGGGGGVGPLLRLAGGGRGGGCFWRGVLLSSVDR SLNYSELVSYFTVGNELGAGNPHRAKLAAMVALGCAFIIGIFNVLWTVLLRERWAGLFTKDDLVKSFVASVLPIIGLCELGNCPQTTGCGVLRGTARPAI AARINLGSFYCIGTPVAVGLAFGLKLGFPGLWFGLLSAQVACAASILYVVWVCTDWEHEALKARKLTQIEMGGSSCGGPKEGDEESKGLLMGNDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71870			MATE efflux family protein (.1...		Lus10038987 [exp]	0	1
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10041000 [exp]	10.9	0.9386
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10030040 [exp]	12.0	0.9271
					Lus10020728 [exp]	19.7	0.9212
AT2G48020			Major facilitator superfamily ...		Lus10008184 [exp]	22.7	0.9290
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Lus10036086 [exp]	24.7	0.9285
AT1G65820			microsomal glutathione s-trans...		Lus10007375 [exp]	27.6	0.9205
AT3G01360			Family of unknown function (DU...		Lus10028821 [exp]	32.8	0.9184
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10006742 [exp]	41.2	0.9169
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Lus10017212 [exp]	42.2	0.9188
AT1G16670			Protein kinase superfamily pro...		Lus10023510 [exp]	45.9	0.9070

Compare expression of checked genes

Lus10038987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.