Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05070 466 / 6e-164 DHHC-type zinc finger family protein (.1) AT2G40990 441 / 4e-154 DHHC-type zinc finger family protein (.1) AT3G56930 420 / 1e-144 DHHC-type zinc finger family protein (.1.2) AT3G56920 408 / 6e-142 DHHC-type zinc finger family protein (.1) AT3G26935 309 / 8e-102 DHHC-type zinc finger family protein (.1) AT4G24630 307 / 3e-101 DHHC-type zinc finger family protein (.1) AT3G48760 308 / 6e-101 DHHC-type zinc finger family protein (.1) AT5G41060 295 / 1e-96 DHHC-type zinc finger family protein (.1.2) AT5G50020 293 / 2e-95 DHHC-type zinc finger family protein (.1.2) AT4G22750 84 / 8e-18 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027274 [exp] 801 / 0 AT5G05070 468 / 2e-164 DHHC-type zinc finger family protein (.1) Lus10035395 [exp] 614 / 0 AT5G05070 463 / 1e-158 DHHC-type zinc finger family protein (.1) Lus10030997 [exp] 484 / 2e-167 AT3G56930 332 / 1e-107 DHHC-type zinc finger family protein (.1.2) Lus10012096 [exp] 405 / 3e-139 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10010447 [exp] 384 / 2e-127 AT3G56930 451 / 3e-152 DHHC-type zinc finger family protein (.1.2) Lus10035177 [exp] 323 / 5e-107 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10022451 [exp] 324 / 6e-107 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10016754 [exp] 323 / 7e-107 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10032009 [exp] 320 / 8e-106 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G025200 [exp] 502 / 5e-178 AT5G05070 468 / 1e-164 DHHC-type zinc finger family protein (.1) Potri.006G027500 [exp] 500 / 3e-177 AT5G05070 456 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 416 / 2e-142 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2) Potri.006G027400 [exp] 397 / 2e-135 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2) Potri.015G101900 [exp] 327 / 2e-108 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 319 / 1e-105 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 316 / 2e-104 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.012G103300 [exp] 316 / 4e-104 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 313 / 2e-103 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 310 / 3e-102 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10038990 pacid=23150640 polypeptide=Lus10038990 locus=Lus10038990.g ID=Lus10038990.BGIv1.0 annot-version=v1.0 ATGATTCCTCCTAATCTCAACACATTCAGGCTTTATCAGCTTTGGAAGGGTAACAATAAATTTCTATGTGGTGGGAGACTAGTATTCGGTCCGGATGCTG CATCGTTGTTCTTGACATCGTTCTTGATCGGTTGCCCTGCGGTCACATTTTGCTTCAAAATGTTGCTAATGATCGGCCAAGATCCCGCCTTTAACTACCC TGTACTCGTCGGTGGATGGATTCTCCTCGTTATGGACTTTGCATTCTTGTTCATGACATCAAGCAGAGACCCAGGAATCATCCCGAGGAACTTGAAGGCG CCCGAGATGGACGAATTCGCACTCGATATGACGACATCGTCGATGGAGTGGGTGAACAACAGACTAGCGAACTACAAACTTCCCAGGACAAAAGATGTGT TTATCAATGGTTACAGTGTGAAAGTTAAATTCTGTGAGACTTGCTTGCTGTATCGTCCTCCTAGAGCCTCCCACTGCTCAATCTGCAACAATTGCGTCCA GAAGTTTGACCATCACTGCCCTTGGGTTGGCCAGTGCATTGCATTGAGGAACTACCCGTTTTTCATATGCTTCATATCATCATCAACCATGCTGTGCATG TACGTGTTTGTGTTCTCGTGGATCAACATCATCCGACAGAAGGGAAATTTAATGAGTGTTCTGTCCAATGACATCATCTCCCTCACTTTGATCATTTACT GCTTCATTGCCATCTGGTTTGTCGGCGGGCTCACTGTCTTCCACTTTTACTTGATCTCCAGAAACCAAACGACTTACGAGAACTTCCGGTACCGGTACGA CAAGAAGGAGAACCCATTCAGAAGAGGGGTGCTGCATAATTTCAAAGAAGTGTTCGTGTCGGACATTCCTCCGTCGGCGGTGAACTTCAGGGAATGGGTG GTGCCGGAGATCATCAAAGATTCGGTGAGGAGTACCGAGGACATGATGAGCGAGAGCATCAGCACTTACAGGGGATCCAAGGAGAAATTCGACATGGAAA TGGGAGGAGATAAGCTTGGGAAAGAAGGGACTAGGCTTCCACCCATATTGCAGAACTTGGATTATACCAGTAGTTTTAACGATGTCGACGACGACGACAA AATTTTGATGAAGAAGAGCATTGATGTCAATGGAGATTCTGCATTTGACTCCTCGTATGTGTTGTCAGATCATTATAGTGCACACCACAGGGTCGTCAAT GGCGGAGCAACGGAATTAATTAGTCACTTCGATTAA
AA sequence Show only first row Show all	>Lus10038990 pacid=23150640 polypeptide=Lus10038990 locus=Lus10038990.g ID=Lus10038990.BGIv1.0 annot-version=v1.0 MIPPNLNTFRLYQLWKGNNKFLCGGRLVFGPDAASLFLTSFLIGCPAVTFCFKMLLMIGQDPAFNYPVLVGGWILLVMDFAFLFMTSSRDPGIIPRNLKA PEMDEFALDMTTSSMEWVNNRLANYKLPRTKDVFINGYSVKVKFCETCLLYRPPRASHCSICNNCVQKFDHHCPWVGQCIALRNYPFFICFISSSTMLCM YVFVFSWINIIRQKGNLMSVLSNDIISLTLIIYCFIAIWFVGGLTVFHFYLISRNQTTYENFRYRYDKKENPFRRGVLHNFKEVFVSDIPPSAVNFREWV VPEIIKDSVRSTEDMMSESISTYRGSKEKFDMEMGGDKLGKEGTRLPPILQNLDYTSSFNDVDDDDKILMKKSIDVNGDSAFDSSYVLSDHYSAHHRVVN GGATELISHFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05070			DHHC-type zinc finger family p...		Lus10038990 [exp]	0	1

Compare expression of checked genes

Lus10038990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.